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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit
6 i6 U" Q, @( v: r- R" Q+ G% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k4, P1 |/ M) E0 N1 z5 Y; ^, I' P
% k6->k6 k7->k7; f p! B7 p- e e3 M: `. O1 i; z
% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);1 |2 t; f6 Z; m: D) ?+ y
% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);
8 [: t8 t9 N: O& i# D4 u% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);, R! Y, c. ?9 r/ D! h6 q: K
% dLadt = k(7)*C(Hmf);
. S" B/ z# @, c5 F%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);
0 C+ L" b, E/ v0 a+ ]clear all
2 \2 Y2 {6 U: f! rclc
/ w! a$ l$ O( Q9 T& e* g/ Qformat long
7 Z% g3 H4 T# L) n% t/min Glc Fru Fa La HMF/ mol/L
7 x/ X6 \7 R) d( _1 j' Q' k2 I+ m Kinetics=[0 0.25 0 0 0 09 [+ v6 h9 G9 Z. d( P8 u# ~
15 0.2319 0.01257 0.0048 0 2.50E-04. l/ H4 ~3 f; n4 v- V
30 0.19345 0.027 0.00868 0 7.00E-04
! ^" Y) }' g: T7 A9 |: W7 q) | 45 0.15105 0.06975 0.02473 0 0.0033
7 c( h& h+ K" ]& ]) s& ` p 60 0.13763 0.07397 0.02615 0 0.00428
- j& f- f/ x" t 90 0.08115 0.07877 0.07485 0 0.014053 G6 y( q& b7 F; E, o. H% J
120 0.0656 0.07397 0.07885 0.00573 0.02143
8 T# ]" y" M' D5 u- g9 }0 } 180 0.04488 0.0682 0.07135 0.0091 0.03623& ^* m& j: r( N6 G6 W6 }: ?
240 0.03653 0.06488 0.08945 0.01828 0.054529 `/ k7 Z! | c/ Z
300 0.02738 0.05448 0.09098 0.0227 0.0597
+ ~& b. x4 C5 h5 h' i 360 0.01855 0.04125 0.09363 0.0239 0.06495];
! b/ n, h, ^$ c ?& R: g0 Kk0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值
7 h& L T$ m* j9 rlb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限/ d3 c& e% Q9 M: h9 Y
ub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限1 _$ |8 Q: @* a7 i- X
x0 = [0.25 0 0 0 0];5 N( m( F! `/ Z& @' k
yexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6]* y9 w) n5 T! Y! r0 r
% warning off" R; q1 ?3 |) J' t/ i
% 使用函数 ()进行参数估计% t1 Z- E5 h; Z
[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);+ f! Y5 M w' f1 ]% P. E1 i
fprintf('\n使用函数fmincon()估计得到的参数值为:\n')- `, C: r, [( W# l1 ~! z5 t% ~, d6 D0 B
fprintf('\tk1 = %.11f\n',k(1))
' C1 P" s/ f1 J8 u( Rfprintf('\tk2 = %.11f\n',k(2))! s! O d- w7 d) @
fprintf('\tk3 = %.11f\n',k(3))
: z9 u w6 O8 d3 h+ [9 Rfprintf('\tk4 = %.11f\n',k(4))) o: |8 o) s" w+ c
fprintf('\tk5 = %.11f\n',k(5)) ^; y4 o7 l. B k5 O
fprintf('\tk6 = %.11f\n',k(6))
+ k( {: r: ^, s; t' H2 U5 Z* f- \fprintf('\tk7 = %.11f\n',k(7))( K6 Q g2 ^9 R: K( ^' o
fprintf('\tk8 = %.11f\n',k(8))
- z" b1 x4 D! |% [" Ffprintf('\tk9 = %.11f\n',k(9))
0 i% Q- V1 W8 y$ V$ n* y0 cfprintf('\tk10 = %.11f\n',k(10))7 E/ l5 S% z z5 a
fprintf(' The sum of the squares is: %.1e\n\n',fval)
1 u+ C: g" q6 J/ p! M( `k_fm= k;
8 u$ {/ H/ {9 [# G, d3 A9 y( N/ k4 J% warning off
9 A [/ Z: m: }1 g; V% 使用函数lsqnonlin()进行参数估计
/ ]) _" h. {5 g( d! c) a* Z[k,resnorm,residual,exitflag,output,lambda,jacobian] = ..." ^ \5 G& u% n! a |# n
lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); 5 h) Q. s% T. o' \
ci = nlparci(k,residual,jacobian);, c+ F' T' U* C( N0 v/ h7 I9 A
fprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')- @0 Y; w& _( j3 P6 V
fprintf('\tk1 = %.11f\n',k(1)) I4 t7 r6 Q. x0 R* {
fprintf('\tk2 = %.11f\n',k(2))
q1 A. n" Z" ~2 afprintf('\tk3 = %.11f\n',k(3))
& N" ?) @0 b! |# Cfprintf('\tk4 = %.11f\n',k(4))0 i* F7 C ]4 ~7 V" `* i' I( A
fprintf('\tk5 = %.11f\n',k(5))
+ z! B/ f- R1 {+ zfprintf('\tk6 = %.11f\n',k(6))! x2 a) j3 @! \8 w) I
fprintf('\tk7 = %.11f\n',k(7))+ b$ p5 {! [' o2 c9 U
fprintf('\tk8 = %.11f\n',k(8))! `# e! ~+ u- @5 k( M" U% v
fprintf('\tk9 = %.11f\n',k(9)): m' w0 X5 D+ u: v, @/ X; R9 j4 P) T
fprintf('\tk10 = %.11f\n',k(10))
3 k3 k {0 ^9 r6 Ofprintf(' The sum of the squares is: %.1e\n\n',resnorm)" {; }5 q s3 i. ^* Q
k_ls = k;' x/ l% g4 p) |
output
* }% x! x" s8 Q2 G& Kwarning off+ r% _2 d0 G4 ?) Z6 o. N
% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计
1 X: ^0 P1 Z I8 F! K* Y6 jk0 = k_fm;+ d( u4 k+ a# A# p8 C; A( Q
[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...7 a+ K) u' P5 t, M) u
lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); 2 O0 D7 {- q0 F/ T: Q& H
ci = nlparci(k,residual,jacobian);
+ `9 V+ i! {3 K7 \+ {fprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n')% E% d% v4 O6 f- d2 E, v
fprintf('\tk1 = %.11f\n',k(1)) ~$ v4 J! G7 n: P
fprintf('\tk2 = %.11f\n',k(2))
- @) h& l, D5 ?) F0 i. e5 N. x% v' ^fprintf('\tk3 = %.11f\n',k(3))6 H/ B8 E) O' i! R
fprintf('\tk4 = %.11f\n',k(4))
y9 @! `: ?2 E2 {; T& e! X" j9 `fprintf('\tk5 = %.11f\n',k(5))+ q7 U# y, }) k# U/ c% O
fprintf('\tk6 = %.11f\n',k(6))
/ e" O$ I+ B; q1 _0 h6 X; ^fprintf('\tk7 = %.11f\n',k(7))& y* Z; i8 Z, M f2 ~) S
fprintf('\tk8 = %.11f\n',k(8))
; i. |/ r, i ^fprintf('\tk9 = %.11f\n',k(9))
a& v. c z2 ]- yfprintf('\tk10 = %.11f\n',k(10))
9 H4 e( L* l: F0 a$ b" Wfprintf(' The sum of the squares is: %.1e\n\n',resnorm)' n/ i% S) N* @: b4 ]
k_fmls = k;
1 q+ C" Y$ B! b$ goutput8 W% P5 y4 G/ R+ u7 ]2 b
tspan = [0 15 30 45 60 90 120 180 240 300 360];
% m" b5 ~+ D% e[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls);
/ z9 _; s/ I$ L) u0 f( L. ffigure;/ g. t* O; R" V4 d
plot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real')- c B. |1 H: e6 T
figure;plot(t,x(:,2:5));3 o2 [5 k( N: P6 N- w! q; N* Y
p=x(:,1:5)
3 z( z8 j1 ]4 n( G3 ]hold on
& x. c! [. F- E% J: kplot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')
1 V4 x3 Z4 C, k! y
. Y0 J+ Y o, b# |7 M( p( j* c2 b6 T3 Z. x- \7 m, q
" T! U& `7 t& ]& N7 G% Ufunction f = ObjFunc7LNL(k,x0,yexp)8 J0 g/ E8 C. c$ `; |
tspan = [0 15 30 45 60 90 120 180 240 300 360];
- w) c! o) C* Z: ?- x[t, x] = ode45(@KineticEqs,tspan,x0,[],k); R' \" ? R. c5 W0 O; @
y(:,2) = x(:,1);% T3 x D% [0 B7 s% O, f. }
y(:,3:6) = x(:,2:5);
2 \" b6 ^( v9 ^7 o% c( \$ df1 = y(:,2) - yexp(:,2);2 b6 m) B% ~0 R
f2 = y(:,3) - yexp(:,3);1 a# l) j( P) |6 m& S8 J, s
f3 = y(:,4) - yexp(:,4);
- W3 J; b1 L9 g2 B$ F" Hf4 = y(:,5) - yexp(:,5);/ k) ^, F; }$ y; A
f5 = y(:,6) - yexp(:,6);% D$ a0 ?% r% O) i C' h
f = [f1; f2; f3; f4; f5];
1 b0 e, _9 O2 p3 l' `- j0 Z+ P" t7 ^) p7 R2 N9 N
7 ?3 g8 M: T L
& P6 y4 r5 }: j/ ]6 L' _function f = ObjFunc7Fmincon(k,x0,yexp)
8 o( [3 ~: W3 ?8 V0 ]tspan = [0 15 30 45 60 90 120 180 240 300 360];
2 a+ @" K8 S4 T" d[t x] = ode45(@KineticEqs,tspan,x0,[],k); 6 u+ l4 U7 v9 r( r
y(:,2) = x(:,1);
3 @3 R( T) L1 N% K2 @! }' |% }2 Ay(:,3:6) = x(:,2:5);; X6 \( p* X0 _$ r2 @6 _
f = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...0 G' s5 I6 g: Y0 ~& s( d) R
+ sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...
b9 e& K) A* f + sum((y(:,6)-yexp(:,6)).^2) ;* _ G! M" a' s- W0 d
5 ^1 ?8 C& u+ Q8 k9 ?8 V# o* l- d1 r" _8 c
8 f: y9 F, ?2 j+ l4 K* E) n$ J, c/ i9 t# R3 U
function dxdt = KineticEqs(t,x,k)
- Z( F+ m6 V# tdGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);
; u9 h6 m# C4 H6 T5 n( a/ qdFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);9 z; }0 E2 K9 l; ^& s- `
dFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);
, |2 g: w! v XdLadt = k(7)*x(5);2 P7 g- ?0 B. o2 Q" F/ k
dHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);# k$ a+ B& V' R2 G' l2 [. S3 M
dxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt]; b/ [6 N: F$ n/ G
& T7 s2 L7 j! u9 A
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Glc.zip
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