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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit* ?% P" I9 `7 S9 S) ]
% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k44 I8 g5 m, H; q) D: B( r) \; J
% k6->k6 k7->k7
0 G. }& i# L* \' i7 `% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);
0 y4 \! C$ R: ~1 _% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);+ }' h- E4 F( P8 |7 x7 \. \2 {: H
% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);, O! Z h# l1 W* }3 ?
% dLadt = k(7)*C(Hmf);* U2 z3 D1 f) r/ v( F7 j/ F
%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);0 V5 U4 L: g6 v% X
clear all, p; @% w' z: L. p
clc
! t! `# [) x/ |& S. f: r! Dformat long
8 n8 t1 R4 ?; V! W& Z% t/min Glc Fru Fa La HMF/ mol/L
: ~5 `; V9 e) c9 U5 t+ R6 ` _! Q Kinetics=[0 0.25 0 0 0 0
# ]1 H0 k& G2 g0 \ 15 0.2319 0.01257 0.0048 0 2.50E-049 ?% @1 x# Y# l( t, Y: Y
30 0.19345 0.027 0.00868 0 7.00E-04
# O# z5 c T; X' n* r 45 0.15105 0.06975 0.02473 0 0.0033( A/ R2 b4 U, P, F' Q& c
60 0.13763 0.07397 0.02615 0 0.00428 n2 {4 [# @0 U9 Q+ M I+ g
90 0.08115 0.07877 0.07485 0 0.01405
! F) D. m1 ?2 r1 r% E& Z 120 0.0656 0.07397 0.07885 0.00573 0.02143
" c4 h/ i$ F8 @0 a3 W, v 180 0.04488 0.0682 0.07135 0.0091 0.03623' n+ O4 }5 Y: }! g l' p& w
240 0.03653 0.06488 0.08945 0.01828 0.054525 w' @! H5 x2 e1 R0 @% z8 P& n
300 0.02738 0.05448 0.09098 0.0227 0.0597
) S6 h+ f. \; x5 L* P0 O8 b! z 360 0.01855 0.04125 0.09363 0.0239 0.06495];, S, Z1 S; D' W7 }/ @5 j
k0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值7 \) K% B' P9 Y; o% ]
lb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限
0 d$ f. Z& W6 E0 u% }ub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限' T6 s# n1 F5 L& H% B3 T
x0 = [0.25 0 0 0 0];
# q/ _1 w# E: \5 A6 n0 Gyexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6] `# x! f7 h- K' r7 \7 P
% warning off
, M/ d/ r+ ^0 D: `7 L9 r6 {/ d- J% 使用函数 ()进行参数估计
: L% p! a; N* R( R. e[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);- A, d" }6 R/ X
fprintf('\n使用函数fmincon()估计得到的参数值为:\n')
4 ^: ~, B( |5 L" C! mfprintf('\tk1 = %.11f\n',k(1))
8 |. C# _" R2 b2 q. Wfprintf('\tk2 = %.11f\n',k(2))
; v# v$ O( @$ b9 q6 Xfprintf('\tk3 = %.11f\n',k(3))
7 V. h/ R* M. o: W* mfprintf('\tk4 = %.11f\n',k(4))
. g$ t3 j2 }8 C. v4 s; B' Bfprintf('\tk5 = %.11f\n',k(5))
; I. p6 w% I+ O8 L5 t7 Z& n$ |& i0 ifprintf('\tk6 = %.11f\n',k(6))
) I) ?0 ?. {* H! h6 h3 pfprintf('\tk7 = %.11f\n',k(7))
* L8 E% V7 s7 \/ J Zfprintf('\tk8 = %.11f\n',k(8))' e4 X, n7 p0 E* I6 r. C
fprintf('\tk9 = %.11f\n',k(9))
1 F' q i1 G% xfprintf('\tk10 = %.11f\n',k(10))
0 w; a" {3 u& Nfprintf(' The sum of the squares is: %.1e\n\n',fval)
" |; W4 I4 ~$ qk_fm= k;, G. M" s# F5 F9 W/ [- u! T
% warning off; F8 Y% _" ~+ G! R/ H4 E
% 使用函数lsqnonlin()进行参数估计 J( \' ~- \2 W
[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
2 Q) G6 D: k Q/ u$ g5 U, J lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
- e; h& A* T# {$ \& L% Eci = nlparci(k,residual,jacobian);: A* [3 o% _/ K1 P: \7 s
fprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')
) l( {' k* w$ vfprintf('\tk1 = %.11f\n',k(1))) y" D; [, z( c/ x, P: j
fprintf('\tk2 = %.11f\n',k(2))
5 b4 @1 a, C! L3 Xfprintf('\tk3 = %.11f\n',k(3))
5 e6 h( j9 B3 W$ @& jfprintf('\tk4 = %.11f\n',k(4))
& R) D5 o/ l( Z4 A' yfprintf('\tk5 = %.11f\n',k(5))
" Z& z3 V. \* \0 ?fprintf('\tk6 = %.11f\n',k(6))
8 Q- y9 S# l* U, E. C2 xfprintf('\tk7 = %.11f\n',k(7))2 N6 f/ K1 r% B! W1 k
fprintf('\tk8 = %.11f\n',k(8))$ p; q. s0 |0 N n! l
fprintf('\tk9 = %.11f\n',k(9))3 ^5 b5 m. s: T' D) ]% d
fprintf('\tk10 = %.11f\n',k(10))9 i' X( n7 B! ]
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)' q" m4 U" ~7 J% `5 y
k_ls = k;8 F6 L. a! E- h8 {
output
8 V+ D3 w: v" C2 ~- ?- A1 v" Wwarning off
- R, V/ Q/ f- J% B, T4 I* A4 I4 r% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计7 k! Y; O5 K1 v: E% q* G9 {) W8 ~
k0 = k_fm;" i/ }% X0 Z C+ b* {' d
[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
- E3 ^ f2 G# {9 ^3 f lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
3 U5 f6 Z5 l9 k5 xci = nlparci(k,residual,jacobian);$ g2 G! U/ Z& c: P# {! _+ X% c
fprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n')+ A1 }5 |' H+ _ d$ A
fprintf('\tk1 = %.11f\n',k(1))/ I1 ~; M% q- |1 |% Q- u: G
fprintf('\tk2 = %.11f\n',k(2))% ^! i5 r' `7 K6 o( T5 r
fprintf('\tk3 = %.11f\n',k(3))
9 p& w- W' R' A% x6 J6 qfprintf('\tk4 = %.11f\n',k(4))& O( e% u& A( J" P
fprintf('\tk5 = %.11f\n',k(5))
1 I, a* V; E/ v6 s5 c; e& |) T0 S! Cfprintf('\tk6 = %.11f\n',k(6))
- M r* h4 L1 [; xfprintf('\tk7 = %.11f\n',k(7))) r2 U# Z+ v" I5 i0 N. o1 ^4 i
fprintf('\tk8 = %.11f\n',k(8))9 q2 }+ Z8 J4 i3 S( U
fprintf('\tk9 = %.11f\n',k(9)): V5 F) G3 K+ k/ j
fprintf('\tk10 = %.11f\n',k(10))' c" k# y3 @( a8 a$ A. U Y
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)
7 `" ]) B0 {$ M& p+ C" O' [k_fmls = k;
" X9 T) Y, N s1 u) T, Doutput! S9 Y ^5 o7 d5 I2 |+ R
tspan = [0 15 30 45 60 90 120 180 240 300 360];% d# v# U; ~3 k8 e& i
[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls); / o3 Y6 K0 o" d- W r( [
figure;$ O0 s: f/ c0 H. a, [# t5 d8 b
plot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real')
' d- x" S; |! h+ g9 Ffigure;plot(t,x(:,2:5));
6 J, j' |7 v* H5 Q$ k$ p: `2 ~, Yp=x(:,1:5)
$ i; V! Z9 G: D1 I) whold on
) o. u/ c+ u/ Y. n. b& k1 C, j6 Y# ]plot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')+ `- _; D) s6 Y7 }$ [* U
2 r5 \. F$ q. I4 i4 r9 [6 }: N
' @; t7 p. L% m2 N" Y& {0 t6 K0 ~! \3 h/ \5 E5 ^8 I
function f = ObjFunc7LNL(k,x0,yexp)( p U, m: s! O% ]6 u7 r
tspan = [0 15 30 45 60 90 120 180 240 300 360];
0 l5 E3 F! ~" @[t, x] = ode45(@KineticEqs,tspan,x0,[],k);
* b F; x j/ C/ q, ^9 f s3 O; {y(:,2) = x(:,1);! I$ e& `# ?2 Q1 G4 d+ n# S$ k3 Q
y(:,3:6) = x(:,2:5);3 _0 K0 b( `) e1 C, {# x
f1 = y(:,2) - yexp(:,2);. |- B' q2 [2 m
f2 = y(:,3) - yexp(:,3);& K$ v# \) g( o q* V! U
f3 = y(:,4) - yexp(:,4);
" f, `, b" a5 y+ s ]* t) Jf4 = y(:,5) - yexp(:,5);/ h7 E& L/ Z @$ Q9 `) N8 ]
f5 = y(:,6) - yexp(:,6);
; p5 Z. b$ b, n7 n; s) J6 p4 cf = [f1; f2; f3; f4; f5];
* a- `) v" [1 Z$ _5 U* H
5 a! v& `+ X, l4 {/ V
* b, d+ `- R' y" s/ h) s7 {8 V7 m9 Y
: a$ a. B4 s" bfunction f = ObjFunc7Fmincon(k,x0,yexp)9 m7 \* ]5 C; L5 g
tspan = [0 15 30 45 60 90 120 180 240 300 360];( z8 J2 m2 D* F6 j0 \/ j
[t x] = ode45(@KineticEqs,tspan,x0,[],k);
8 I) p0 I" A( q2 d9 f3 c! [/ ry(:,2) = x(:,1);
7 X8 ^4 g( d7 P- Y- V' k+ b7 s. ~. Py(:,3:6) = x(:,2:5);
; r3 E- F/ i( u1 J( d1 N; e+ q& @ U8 Jf = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...4 l* M8 K @- Z8 n+ J/ @1 H( W- M
+ sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...
2 T+ m% z: H# n& ^ + sum((y(:,6)-yexp(:,6)).^2) ;
% h, o. @' ?5 ~4 O$ s
" K" P- q5 D% \, y: F
% a- |9 }! n: r* ~( W
% S) P/ n, O4 H: B( C1 x' x: G) `7 q' _- `6 Y- i: P
function dxdt = KineticEqs(t,x,k)
# p6 C5 O% c8 [- K: WdGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);: }" S# W% D3 C6 k I
dFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);4 \6 n( d: r F
dFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);
6 z: ?! j) I& D' l% Z4 ]& vdLadt = k(7)*x(5);
& D8 U! G. v( m/ DdHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);
" ?9 T, z8 Z( D6 X1 _! Pdxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt];+ V( t/ M% |1 ^4 ?% ^, L2 s( n
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Glc.zip
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