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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit4 e7 U1 o& w2 M+ j. {7 ^- h
% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k4
: }& Z% ]- g4 A% k6->k6 k7->k7
4 ~# N6 v" ]8 I) y% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);2 }0 \& }$ K- }9 g8 F! a* i+ M
% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);
' s, C" }% u6 o6 J+ H6 _8 `7 x% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);
0 L; Q2 M0 l# y/ y2 U' L- b: J% dLadt = k(7)*C(Hmf);3 _; z7 l1 w& C( T: `
%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);3 l I+ Z+ ]2 S% c% c
clear all* X& m9 U7 H2 Q9 d" P: y2 |* F
clc: K9 l# @% g6 Q. s
format long
, O& ?/ E# u2 M0 l `7 q3 L% t/min Glc Fru Fa La HMF/ mol/L
8 w0 P9 q/ ^$ K0 K+ m3 i- ]. p Kinetics=[0 0.25 0 0 0 0# n$ o+ B t @" n+ {+ u/ w+ N6 R
15 0.2319 0.01257 0.0048 0 2.50E-04
1 `4 Q. l. U4 S7 ]6 v 30 0.19345 0.027 0.00868 0 7.00E-04
4 e& @0 f4 ~3 X) E, Q 45 0.15105 0.06975 0.02473 0 0.0033
f& J3 y. t+ I5 E( I# k 60 0.13763 0.07397 0.02615 0 0.00428
2 R6 y3 }, U; e 90 0.08115 0.07877 0.07485 0 0.01405
# a: u3 l' e: G" e" k: y' A; | 120 0.0656 0.07397 0.07885 0.00573 0.02143
0 l/ d" Y- d- w8 M: X' z 180 0.04488 0.0682 0.07135 0.0091 0.03623
e: ?8 v, k2 G( ^ 240 0.03653 0.06488 0.08945 0.01828 0.054524 |; R. s! R% m- w- u4 K$ P
300 0.02738 0.05448 0.09098 0.0227 0.0597" V7 E) v1 }. T/ @4 ?' k/ P
360 0.01855 0.04125 0.09363 0.0239 0.06495];' ^3 _6 {# H/ b: x- f2 ]% Q1 M$ K
k0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值. {& P" Q5 |4 m2 t4 Q4 R
lb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限9 O/ i- I/ {4 v2 e
ub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限
0 P8 U5 ~) B) N1 p+ Ux0 = [0.25 0 0 0 0];7 C# A! E9 {3 K
yexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6]
. T6 U/ m& g/ f& j# o6 O+ }$ I% warning off! y' ~6 `" H, m& V- J
% 使用函数 ()进行参数估计
8 J* P' P& \/ S* R- U- X8 b[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);+ a, L+ P8 ^5 O+ G3 w
fprintf('\n使用函数fmincon()估计得到的参数值为:\n')
# l$ K0 P% V4 D8 r) F+ Wfprintf('\tk1 = %.11f\n',k(1)) p1 a0 Z+ c1 z9 g# T
fprintf('\tk2 = %.11f\n',k(2))& V, s' B, F2 P! G' F& \
fprintf('\tk3 = %.11f\n',k(3))5 V1 o3 ` p% E8 j5 J. F
fprintf('\tk4 = %.11f\n',k(4))+ \1 e# V) O U( A8 r
fprintf('\tk5 = %.11f\n',k(5))
( r) i3 j" \- L+ n$ L6 N" N3 T- U$ {fprintf('\tk6 = %.11f\n',k(6)): f) N8 R J9 X1 w( ~2 I$ F, o% I
fprintf('\tk7 = %.11f\n',k(7))4 m* K6 W8 t! Y. R0 N3 [' x
fprintf('\tk8 = %.11f\n',k(8))
9 i3 M2 p+ u1 M& Mfprintf('\tk9 = %.11f\n',k(9)) a4 x$ ]/ M4 [& A! H
fprintf('\tk10 = %.11f\n',k(10))
7 z' ^, \7 o8 I% l( x! Gfprintf(' The sum of the squares is: %.1e\n\n',fval)# e8 t ]# R, [: z
k_fm= k;+ P) Q* ?1 j/ c$ {& B
% warning off
/ [% z" S/ F7 F% 使用函数lsqnonlin()进行参数估计
* Q. J* P( p. P/ B[k,resnorm,residual,exitflag,output,lambda,jacobian] = .../ M. z2 Z1 a* w2 D. }5 B) [
lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); 8 n) N) g1 Q4 O4 _2 n0 s5 W2 F
ci = nlparci(k,residual,jacobian);( f+ X; w0 S$ G+ a! K/ a. H
fprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')
, n! _: S3 K% O- }: |fprintf('\tk1 = %.11f\n',k(1))" o1 U& P/ |4 q- z' E+ ?
fprintf('\tk2 = %.11f\n',k(2))
. f; _1 N, B' o* _+ ~( d3 qfprintf('\tk3 = %.11f\n',k(3))
* a" |9 v5 \8 a! P( Wfprintf('\tk4 = %.11f\n',k(4))
/ ^& G- a; \# U! @$ ? v& z9 p/ N4 Efprintf('\tk5 = %.11f\n',k(5))
. x# p- M* b2 h5 g" D% c1 Z" x6 Gfprintf('\tk6 = %.11f\n',k(6))
) Y2 n) ?) r6 P/ `. Xfprintf('\tk7 = %.11f\n',k(7))
6 ~+ g x8 d- }. K$ L& Qfprintf('\tk8 = %.11f\n',k(8))
4 t: S- W+ c1 G4 C& r+ _5 e" `fprintf('\tk9 = %.11f\n',k(9))' h( c/ a5 S3 Z
fprintf('\tk10 = %.11f\n',k(10))7 M; o8 y* ?* r6 ] |, F, G% m
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)
. @5 i y; }/ c# t& @, ]" xk_ls = k;# g: O0 g8 ~' a1 K6 _* L
output
' O( t" t" O% L; Q' s! z' M( fwarning off, O5 D% U/ y% G3 L- Y0 e F+ G
% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计
* P) N0 \2 C% y% d6 rk0 = k_fm;% t, y5 i: V2 P% K4 _: B& D
[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
% z, o+ G, @5 k; c7 y8 a lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); 9 S! d) t; m9 f# M- `- F& Z
ci = nlparci(k,residual,jacobian);; `/ H6 g3 C+ L4 J( K1 I; L' Z3 P
fprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n'): @$ T" v0 G! x
fprintf('\tk1 = %.11f\n',k(1)): J& B& C2 T' t# B4 ^0 ~& @
fprintf('\tk2 = %.11f\n',k(2))
. w, v$ n( |# F; \fprintf('\tk3 = %.11f\n',k(3))
9 P0 J' x7 x) G$ s1 Qfprintf('\tk4 = %.11f\n',k(4))
: Q! e8 M' ?0 Afprintf('\tk5 = %.11f\n',k(5))
/ }: Y' [7 G9 g7 h$ Jfprintf('\tk6 = %.11f\n',k(6))" C7 \% l- Z/ M, A0 z" a* P
fprintf('\tk7 = %.11f\n',k(7))* Y' N, M0 s, [& h7 ~
fprintf('\tk8 = %.11f\n',k(8))
4 I4 M; W+ T+ v0 [1 ?! nfprintf('\tk9 = %.11f\n',k(9))
& r4 o6 ?, q0 H+ r; C7 E7 pfprintf('\tk10 = %.11f\n',k(10))1 e3 A& V/ x3 R; F, Z- u
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)/ _2 E9 o$ r* I: t5 S) r! o% V
k_fmls = k;* I; e4 x+ \+ s
output
% h4 y; d& `, l2 L' Wtspan = [0 15 30 45 60 90 120 180 240 300 360];
3 e' v. I& d! x! c% ~[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls);
+ g4 `" g9 a6 z- g3 K4 i9 ^. Gfigure;/ D: A% n! C& ~+ s* Z' D
plot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real')
_6 | ~7 Y0 Z' ?/ L3 @$ [figure;plot(t,x(:,2:5));
$ s+ T: Y- Y. o ~ Mp=x(:,1:5)& y7 E! \, m L, ?3 u
hold on1 t+ c1 a3 B W b6 [* e+ c
plot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')
8 ^0 l( Z) J; v$ a& |! B1 z
: A6 ]# |, ]) e2 D
5 ^) n+ O9 \2 n: ^7 g. w7 Z; `8 P+ V2 e
function f = ObjFunc7LNL(k,x0,yexp)# w/ g9 b; o/ Y3 ]. ?3 O5 q
tspan = [0 15 30 45 60 90 120 180 240 300 360];- A4 s7 t5 J# r& \9 ^+ R J
[t, x] = ode45(@KineticEqs,tspan,x0,[],k);
1 \7 `4 B+ }: t9 Uy(:,2) = x(:,1);
' g, u1 w- O9 x9 D& J. {& I" m4 |y(:,3:6) = x(:,2:5);
8 `0 g8 ^+ v1 j3 p4 Uf1 = y(:,2) - yexp(:,2);* k* H5 V6 _! m5 `
f2 = y(:,3) - yexp(:,3);# N; K0 @7 \8 l0 E8 a, j) w
f3 = y(:,4) - yexp(:,4);, T8 V# O. z+ h6 c
f4 = y(:,5) - yexp(:,5);- |7 d! v) _) w9 U
f5 = y(:,6) - yexp(:,6);& ?, C) O# p% C3 x( U) H1 d3 d; f
f = [f1; f2; f3; f4; f5];) a$ X. M" [6 K* v4 o9 n
( @* i }* B; z% ?4 b" _
8 M* m0 \9 a& ]! R0 ^! \( ?$ D" L3 c
7 f" ^% s0 y# S& t- n
function f = ObjFunc7Fmincon(k,x0,yexp)
8 _) Q4 c/ F2 k! n- |tspan = [0 15 30 45 60 90 120 180 240 300 360];
1 e2 w( A) y3 j! G9 b( a[t x] = ode45(@KineticEqs,tspan,x0,[],k);
! G) Y" Z% U# R6 I3 T0 [y(:,2) = x(:,1);
: I# x" o: I, b3 |7 D8 z/ \3 Vy(:,3:6) = x(:,2:5);% [. E: W1 }6 L
f = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...8 y2 y! e7 V0 t& c
+ sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...
2 O5 {, j8 q' p! N J + sum((y(:,6)-yexp(:,6)).^2) ;
) l. C3 n- D$ N) M8 o% w) n+ V% V) q5 x
! d1 d3 h" d) {! ~
$ S; h ^# k m. [- i# [( ]* I0 S& \& F) a7 I$ ^6 k1 y
function dxdt = KineticEqs(t,x,k)
! y" J+ b: J; C- R) A. D/ odGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);
& n5 d" p) q: p' ]1 cdFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);
% w4 }: ]) ^. w- [6 f4 pdFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);4 k$ I" R& w; N, m1 U# _
dLadt = k(7)*x(5);8 S1 ^ f q! R# s& w; t |4 M( b _7 F
dHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);
7 x# S# H4 X" }$ F6 U6 f2 Cdxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt];( a' @: v; l+ \! i2 E5 i. E, t2 D
8 W2 E5 t" Z" Z; b+ Q+ Z
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