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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit
. ^& N- E( t3 B% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k4
7 @# c( W. V0 j! T$ k+ j1 g& M% K% k6->k6 k7->k7
) V; j' B& f, j3 Q3 ?* O% ~% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);; z# ~5 c; a$ r9 y+ r
% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);
i& M$ q C4 `+ U. C0 {0 T% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);- V* ^! h- O7 T- u* b* |
% dLadt = k(7)*C(Hmf);
: i ?- m* R5 r4 w2 B3 y%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);6 k1 k8 x; Z5 p& J9 z7 j/ u+ R3 \' `
clear all
& S! c8 s/ W8 V+ \5 i7 cclc8 }, R0 h; S: R6 e& ^% v( Q
format long( n, I5 Q3 y* \& {
% t/min Glc Fru Fa La HMF/ mol/L
. v" B$ `5 H& ?& j, C Kinetics=[0 0.25 0 0 0 04 }! G, U1 A$ K; V" K
15 0.2319 0.01257 0.0048 0 2.50E-04
/ l' x& h& I9 \& W) I' b2 C 30 0.19345 0.027 0.00868 0 7.00E-041 \9 F! N( B6 i4 X' `1 }* Z
45 0.15105 0.06975 0.02473 0 0.00336 Y2 L1 G1 q8 [- R
60 0.13763 0.07397 0.02615 0 0.00428
& x' Y {6 D( v1 [: A' H0 H 90 0.08115 0.07877 0.07485 0 0.01405
& p3 v3 ~5 t) G: d) ~4 N% m/ h 120 0.0656 0.07397 0.07885 0.00573 0.02143
1 [ a+ K- g6 }1 `" h 180 0.04488 0.0682 0.07135 0.0091 0.03623! C" ?! J2 i- ^( s1 k* {
240 0.03653 0.06488 0.08945 0.01828 0.05452/ `. X' O/ M6 ~
300 0.02738 0.05448 0.09098 0.0227 0.0597& [+ z6 F- b; T* j2 G
360 0.01855 0.04125 0.09363 0.0239 0.06495];
, t' `; K4 x- z T( Zk0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值
& y7 R1 X0 b' v0 ?+ Jlb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限
" M) a# z( T* u! Hub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限9 a0 t3 U, E9 S- u; S E9 v% ?
x0 = [0.25 0 0 0 0];
# g+ s. h# Z( f; f- n) [yexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6]
v" U" [* A% K8 Z) u# d% warning off
# o v' t, r: p5 H9 _8 I% 使用函数 ()进行参数估计
- F1 ?9 v* k4 W& d, s[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);3 e, Z S( J$ N e/ z' I2 o
fprintf('\n使用函数fmincon()估计得到的参数值为:\n')
9 C# L4 Z" z3 P4 B7 nfprintf('\tk1 = %.11f\n',k(1))3 b* X* J6 R' I$ [; X
fprintf('\tk2 = %.11f\n',k(2))
% C) `9 w1 |2 J: H2 Y7 O bfprintf('\tk3 = %.11f\n',k(3))
( }( S& P( K* ]; @: P, efprintf('\tk4 = %.11f\n',k(4)). p# ^! s6 ?/ q2 w% Q8 n
fprintf('\tk5 = %.11f\n',k(5))
( r! A: O. J2 o, _* Xfprintf('\tk6 = %.11f\n',k(6))+ p# o" P7 o4 Z
fprintf('\tk7 = %.11f\n',k(7)) g7 g) I$ p4 g+ p. p
fprintf('\tk8 = %.11f\n',k(8))* i! N2 ?$ m7 v7 u* F3 J; i
fprintf('\tk9 = %.11f\n',k(9))
$ m# X% ~: R5 a9 o- }# \fprintf('\tk10 = %.11f\n',k(10))# b( r* m2 g& y% {+ j0 j1 |% X
fprintf(' The sum of the squares is: %.1e\n\n',fval)
8 s1 r$ w4 u1 i1 M6 mk_fm= k;0 q( }/ {5 }) V6 Z2 i2 k
% warning off$ j! F5 o2 M) X6 ^ V
% 使用函数lsqnonlin()进行参数估计) c5 o: ]) V4 n1 H5 u" C. G
[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...- s3 f( j6 q! H) F+ @9 d. z
lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); . S, R6 t$ v5 L* Q( v1 C
ci = nlparci(k,residual,jacobian);, a6 a$ N! N1 O5 [- y
fprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')
# h: {" a# o) P; ]- Lfprintf('\tk1 = %.11f\n',k(1))
, q6 i0 ]2 E. S4 K pfprintf('\tk2 = %.11f\n',k(2))
" E- I, Y+ o' z6 J8 Nfprintf('\tk3 = %.11f\n',k(3))( Z- S9 G, A! ~
fprintf('\tk4 = %.11f\n',k(4)) q9 z$ c' v( e
fprintf('\tk5 = %.11f\n',k(5))" E4 ]4 l. D. P: n
fprintf('\tk6 = %.11f\n',k(6))
6 _) J! N _- R# E2 Pfprintf('\tk7 = %.11f\n',k(7))
Y& E7 s9 q5 D- i6 H7 q% U/ S3 ?fprintf('\tk8 = %.11f\n',k(8))8 _! \( i: F* h0 M9 W9 M
fprintf('\tk9 = %.11f\n',k(9)) P! ?" Y3 t( O! M
fprintf('\tk10 = %.11f\n',k(10))1 ^6 \( w& _# z! q" |
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)
% E% B$ x8 { r; k3 X2 ?) s% }k_ls = k;% g/ J/ E9 h: W
output! @/ R1 F9 f5 g) w7 b3 ~
warning off' U1 k3 O' q) A! x& p
% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计
) T3 s) A% p) a) i, K* yk0 = k_fm;
/ R- @" [9 B3 f" o9 L5 \' p2 Z% S[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
/ L1 y x9 [% R1 z* z8 l1 ~ lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
& ?* h' Z2 F* Q1 C: M( @ci = nlparci(k,residual,jacobian);
. r& z/ a; [9 y1 G" Y( ofprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n')9 T9 S& M* o1 D
fprintf('\tk1 = %.11f\n',k(1))
, o: }9 ~( _4 Hfprintf('\tk2 = %.11f\n',k(2))
5 X9 r8 j4 V# `fprintf('\tk3 = %.11f\n',k(3))
7 ]& Z1 V; N1 r5 `7 Cfprintf('\tk4 = %.11f\n',k(4))
" a' n2 D7 [, Q4 t/ m; M1 Dfprintf('\tk5 = %.11f\n',k(5))2 G+ X5 Z9 q; u+ y0 k. Y
fprintf('\tk6 = %.11f\n',k(6))
! E' w9 u; }3 J/ a5 B- w% tfprintf('\tk7 = %.11f\n',k(7))
/ v' M1 I) q: u2 o+ I! Pfprintf('\tk8 = %.11f\n',k(8))
0 @' N5 F0 E& N$ z0 Mfprintf('\tk9 = %.11f\n',k(9))
0 K) A: y) Y: Xfprintf('\tk10 = %.11f\n',k(10))$ `/ Z: Z h6 A1 N4 K7 M
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)
: P2 D- o! N# X* o: k$ mk_fmls = k;
" y0 }* J7 D6 j+ z# H' ]) L5 coutput: e" Z! J1 K8 Q, D; E* c$ F
tspan = [0 15 30 45 60 90 120 180 240 300 360];
4 v ?" o( K7 P2 k' E% [[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls); & D, y" r( k ]1 m2 D
figure;
$ _. h) o; [+ xplot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real')
( B8 }7 s( U4 X2 F9 t( }: Dfigure;plot(t,x(:,2:5));
9 x5 R+ ?( w! e1 y1 T. h* L) @p=x(:,1:5)# e# d% Y8 X4 w5 K' j: v, i
hold on
3 L. h- f- N- rplot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')
! g$ H9 s/ b! J' i* V6 ^% [; g: o. A( R
; m# ~7 J' {! K. P
' t6 D4 i: r6 w+ I6 X9 {+ rfunction f = ObjFunc7LNL(k,x0,yexp)
+ `% K: I, P2 A2 ?9 \tspan = [0 15 30 45 60 90 120 180 240 300 360];$ o" D, s, x/ v- W2 p! W
[t, x] = ode45(@KineticEqs,tspan,x0,[],k); 7 E* x1 ]. l- [" _
y(:,2) = x(:,1);
9 V- M+ S9 l. P1 w5 h6 }: cy(:,3:6) = x(:,2:5);
2 B: S/ m5 q3 n: J, X# Gf1 = y(:,2) - yexp(:,2);
2 m) o+ g$ G: g! gf2 = y(:,3) - yexp(:,3);
) r# q2 K& m* X$ P8 sf3 = y(:,4) - yexp(:,4);
# e' W+ I& ]/ [1 of4 = y(:,5) - yexp(:,5);
" n6 L. M' C* _) Xf5 = y(:,6) - yexp(:,6);
2 g# ~# V/ z# h( w" ?f = [f1; f2; f3; f4; f5];/ D% u) h5 @8 W$ g7 l! K( |
" u6 A9 z: R2 } G+ V/ n
5 E; u, h. t# k' w
) `2 f, \5 Q) B g2 ?6 Hfunction f = ObjFunc7Fmincon(k,x0,yexp)' Z7 _9 r. |7 u- j# f J) {! r
tspan = [0 15 30 45 60 90 120 180 240 300 360];
! \/ `# x- M7 C/ j[t x] = ode45(@KineticEqs,tspan,x0,[],k);
% L9 ~$ R; f3 X) ~9 k8 Ty(:,2) = x(:,1);1 _+ t0 l& J0 v" {# l3 z
y(:,3:6) = x(:,2:5);& X i5 y7 e/ B ?# l
f = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...9 B# J% P+ ~8 ]) K" R: P# ?+ A0 g
+ sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...
; ~- k" S8 o7 A* U* v- x + sum((y(:,6)-yexp(:,6)).^2) ;
4 Z( r- f! p- ^: C% B d; ?- L/ E4 ]
+ b% a1 z2 n' v8 O$ z6 F9 V( k G# ]7 `6 u# ~! {
5 z1 A- w# ~- ^( _5 g' b' c5 `
' |' ^$ b# z! E* M0 V
function dxdt = KineticEqs(t,x,k)
. L2 s# O% F7 q, ?$ a& U0 ~dGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);
+ l" h, i# [- k/ e9 ~7 \4 mdFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);
, G- u4 C3 P y8 ydFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);
" \8 M# H9 T) Y |7 G7 GdLadt = k(7)*x(5);5 z5 Y: U! O) g$ b2 L0 M
dHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);
U: Z) ~/ {9 I" r8 pdxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt];4 J$ O/ M* @' p' ~9 U
. q, c6 b7 g( b3 [; e( ?) N$ g- n+ F9 C8 k/ m( i
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Glc.zip
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