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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit
+ U( B2 m0 ?+ S& S. l3 ?+ Y3 E& c# w% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k44 W4 F f6 D, J
% k6->k6 k7->k7
f/ M8 ? ]- o/ P0 l: V3 i- L% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);, J8 y ]/ J: \- B% @& x
% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);- b' I; I) N+ f1 Z% C+ @
% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);
( C' b) f+ ~. q/ G; b4 ?% dLadt = k(7)*C(Hmf);0 n1 l) b. v3 T( C m1 F% Z+ L
%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);/ R* C* o* ^ J
clear all
8 O1 ? F* u- E" `7 l, p. H, [# Uclc
) j# E: O Z3 g6 w8 kformat long! k. e7 Q& W/ \
% t/min Glc Fru Fa La HMF/ mol/L
8 \5 B7 S# c% Q% D; Y! e Kinetics=[0 0.25 0 0 0 00 Z" x# D" ~1 x# `7 P) a7 S$ ]
15 0.2319 0.01257 0.0048 0 2.50E-04/ y2 A* o. h8 }, O# M
30 0.19345 0.027 0.00868 0 7.00E-04
5 j/ Q8 a6 t! g! U7 J3 A1 a 45 0.15105 0.06975 0.02473 0 0.00331 T& @9 O4 b) f7 X( o/ O6 A
60 0.13763 0.07397 0.02615 0 0.004283 v" y3 a7 P" V3 `% T' T3 g
90 0.08115 0.07877 0.07485 0 0.01405/ @8 T4 D0 v9 I6 Q! L
120 0.0656 0.07397 0.07885 0.00573 0.02143
" `6 M$ n7 R! K1 J; S; A: n1 b2 A& t! | 180 0.04488 0.0682 0.07135 0.0091 0.03623
' f( h. O l1 _( X- c2 X/ V 240 0.03653 0.06488 0.08945 0.01828 0.05452
L/ C7 M) a: K 300 0.02738 0.05448 0.09098 0.0227 0.0597
1 B8 }. H/ J* |( R+ x% }/ E 360 0.01855 0.04125 0.09363 0.0239 0.06495];
( Z& Q: \" b" t5 `) ?- H1 nk0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值
/ R, m& \# H" E* S) Elb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限
- t# l; |. `% f3 K. p8 Rub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限% w" |' C6 ?; f; v, o
x0 = [0.25 0 0 0 0];
' E; ^4 K- e. F3 Kyexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6]4 }& @+ t/ U9 O5 f" x5 N
% warning off
- L' P$ q5 t% O% 使用函数 ()进行参数估计) R& Z$ `* o$ |* Q: t2 y2 J- r
[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);0 H! \" W W7 u* z
fprintf('\n使用函数fmincon()估计得到的参数值为:\n')
3 X# h9 H2 v& z* C" d( U- Jfprintf('\tk1 = %.11f\n',k(1))7 Z9 s' E/ p% \5 i: N
fprintf('\tk2 = %.11f\n',k(2))1 U+ F5 i* K X {2 a5 |
fprintf('\tk3 = %.11f\n',k(3))5 x, T q3 s7 Y# k) J0 Y, R
fprintf('\tk4 = %.11f\n',k(4))- {3 @& r* `3 K, \' V
fprintf('\tk5 = %.11f\n',k(5))8 N4 W9 M/ t H1 Q: C3 x4 s# J
fprintf('\tk6 = %.11f\n',k(6))- s b! H* |# W' `5 t7 [
fprintf('\tk7 = %.11f\n',k(7))
4 ~3 u% ?4 Z3 Jfprintf('\tk8 = %.11f\n',k(8))
# q0 D; D' k: c, U1 H( ifprintf('\tk9 = %.11f\n',k(9))
7 w/ { s6 c. b) {8 ~: l* yfprintf('\tk10 = %.11f\n',k(10))
9 F; g" {; p* W) I3 Q* M+ [fprintf(' The sum of the squares is: %.1e\n\n',fval)
% [* a" k- _% A2 r/ d- Fk_fm= k;
+ O1 E0 X* \3 K( B$ q% warning off5 u3 s5 \) r' R% U2 o* d/ {" n
% 使用函数lsqnonlin()进行参数估计
0 O# Y& T2 V A/ p4 m[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
& u" B1 \5 y Q lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
, d) c3 z/ K% e) Oci = nlparci(k,residual,jacobian);: \* Q: A6 N* t( m
fprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')
* A" G# G4 ?3 z! w$ f' U7 f+ r0 wfprintf('\tk1 = %.11f\n',k(1))
5 b! w7 ~. H5 G+ f, R+ [$ |3 wfprintf('\tk2 = %.11f\n',k(2))
; D. {( _ _6 l0 Ffprintf('\tk3 = %.11f\n',k(3))
: p) G7 f3 X- k7 S# _2 r7 W4 Afprintf('\tk4 = %.11f\n',k(4))5 N, W. L3 q' }1 X4 [
fprintf('\tk5 = %.11f\n',k(5))( I1 ^, q' l8 A
fprintf('\tk6 = %.11f\n',k(6))- e# H0 P7 O" n" H: t
fprintf('\tk7 = %.11f\n',k(7))
: N6 j' _' f6 c/ Z% Zfprintf('\tk8 = %.11f\n',k(8))
$ H! W' ^6 b0 N' n& Y8 m$ X: ]fprintf('\tk9 = %.11f\n',k(9))
- t5 A* G; e: g( s! R$ Tfprintf('\tk10 = %.11f\n',k(10))6 J2 R' ]9 u1 H9 { s
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)0 _" ^$ f/ x2 w# b% ]# S8 `- R
k_ls = k;+ v3 c( W R; Q0 }
output
P5 P1 r1 O8 q' ]9 awarning off7 v. ?4 j7 _$ A( N2 j
% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计8 A, i5 J$ P* X& x, c) w& q
k0 = k_fm;
4 j, j5 A# {7 E" L$ r2 L% X[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...2 @# ~4 t' N; T0 r' R( N
lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); 2 g1 h% v( }' R- w- `, ]0 D: y
ci = nlparci(k,residual,jacobian);
6 c3 h) n8 H* B9 xfprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n')
' N& f- {/ q' W$ }7 cfprintf('\tk1 = %.11f\n',k(1))
0 E; X% `8 P# ~ w- T# rfprintf('\tk2 = %.11f\n',k(2))
2 r4 D/ q; Y, t4 C6 g( kfprintf('\tk3 = %.11f\n',k(3))5 d' d P( O+ `& \
fprintf('\tk4 = %.11f\n',k(4))
1 Q; c& ]! n N7 l4 C! Gfprintf('\tk5 = %.11f\n',k(5))
8 ?. j& v# a6 a4 Gfprintf('\tk6 = %.11f\n',k(6))
! S6 e; u, T* \2 ^1 jfprintf('\tk7 = %.11f\n',k(7)); o7 l1 `1 I; i' g
fprintf('\tk8 = %.11f\n',k(8))
- l& S" }' r& P- l% P. G+ Bfprintf('\tk9 = %.11f\n',k(9)): }/ L3 M% w8 w6 g
fprintf('\tk10 = %.11f\n',k(10))! s1 v/ d8 }6 k( s8 O: S
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)4 l8 w6 ]% Q H& ^! s6 O+ F& z
k_fmls = k;/ P: H8 G4 M* I9 N# N4 b& @
output
6 b! ^5 y4 G2 m, D9 [1 ~tspan = [0 15 30 45 60 90 120 180 240 300 360];
) t' \- s6 t' S* K H[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls);
3 S7 d6 R' L0 l2 m6 N/ F; P# P' {figure;
0 `' k6 i4 C7 P! Lplot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real'). l7 g! o/ C" K: v# [. _* Q7 Y( M/ j7 a
figure;plot(t,x(:,2:5));
- m$ v% s9 G9 I ~; kp=x(:,1:5): a6 v7 d8 D! L
hold on
3 E' P5 ?1 ]( X0 o2 Q" uplot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')
6 E) ~5 H+ O" f w0 Y2 e, U) Y/ j" K3 u6 l1 m, F, Z
3 a1 h8 Y5 H4 ]3 H' k$ p* U$ [/ j& y; t7 v7 c# _5 |4 D
function f = ObjFunc7LNL(k,x0,yexp)
2 z9 ?( ?4 i; K2 U; _tspan = [0 15 30 45 60 90 120 180 240 300 360];
8 `' e5 h8 e; I, v6 B& D6 O" ~[t, x] = ode45(@KineticEqs,tspan,x0,[],k);
$ ^8 R% ?0 j' h1 _/ Ty(:,2) = x(:,1);* L0 x D3 l7 i
y(:,3:6) = x(:,2:5);! [* X- V8 W$ `& J6 ~! W
f1 = y(:,2) - yexp(:,2);* z" e( M' W' ?# q5 ^% ~1 U
f2 = y(:,3) - yexp(:,3);
; H+ b- b" U, K' o0 P( L6 o1 Hf3 = y(:,4) - yexp(:,4);
3 M1 g+ h9 B5 n/ bf4 = y(:,5) - yexp(:,5);5 ~" n8 N+ t1 N
f5 = y(:,6) - yexp(:,6);: ~$ r. F3 N: H! X8 m5 Z; c
f = [f1; f2; f3; f4; f5];
" O/ X% _. Q6 N2 M! u5 I( U2 ?3 W. m: d6 q1 p& n6 `, q* J
2 _* y: Y5 k- ^& j+ X& s1 W- H) G: {. C
function f = ObjFunc7Fmincon(k,x0,yexp)& g7 e+ Y% W- Q+ i6 N* l1 R6 F/ Z
tspan = [0 15 30 45 60 90 120 180 240 300 360];
8 ~8 o0 @: b2 K X[t x] = ode45(@KineticEqs,tspan,x0,[],k); 5 Z6 E$ ^9 e. x: n1 [6 h, ~
y(:,2) = x(:,1);- x6 u: X1 g: k% Y3 k
y(:,3:6) = x(:,2:5);
* d: Z7 W. f: ^ F( tf = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...% O' h# I; D# W9 i/ l* O0 v, t
+ sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...
( K4 v& e7 Y+ y- I- ? d$ u3 Z + sum((y(:,6)-yexp(:,6)).^2) ;
+ U- X. A" A* O7 e, A( |" W" M1 z" ]
2 d4 Q2 u, p6 d/ @, ~4 R: Q
, O$ V L. m5 [4 }" _* O M! v5 ~4 L
7 C9 p0 r* J4 u9 [9 bfunction dxdt = KineticEqs(t,x,k)
9 A! x' l* _2 Y- V1 mdGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);# `' t7 ^9 G+ T7 }+ ]# I
dFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);
3 _ o! ~) `) F/ `( H, h$ mdFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);
# _0 v6 ^; ]. z, ~2 \: T- IdLadt = k(7)*x(5);' O+ h5 w; g3 }; _
dHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);1 u0 S" z+ S4 ^5 j" a
dxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt];/ V2 w. X- `3 y$ F2 d
/ Z# f2 K6 \) k# Q8 W. M
+ K' }; t* ^) p$ }) T |
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Glc.zip
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