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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit
8 \9 N4 s' d% k' d0 y" Q% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k4
; l4 q6 A$ ?2 e% k6->k6 k7->k7% a. [6 Z. F& E5 O2 G
% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);
7 ]9 h9 h5 k C' n* L y% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);0 G+ ^7 n- R9 ?
% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);( A; e7 ^8 N& S J4 i: ^; `
% dLadt = k(7)*C(Hmf);
" b# d% y6 W5 j# ~%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);
" L" J1 _- X1 {$ ~7 m5 Iclear all& p" ]; Y- b: m
clc
* z) J( ^7 A6 |, o& X5 N5 Cformat long
% ~& B$ S( v- m; P7 f! L$ E6 ~ m% t/min Glc Fru Fa La HMF/ mol/L " G& w9 P& @! ?
Kinetics=[0 0.25 0 0 0 0
( M' Q3 n* ]# I7 S 15 0.2319 0.01257 0.0048 0 2.50E-049 C L) m' s2 `5 L! y) e
30 0.19345 0.027 0.00868 0 7.00E-04
; }. A) ^1 {* m: }' W( z% C$ Z: v 45 0.15105 0.06975 0.02473 0 0.0033
. R4 g' c" Y" O) h- t: k 60 0.13763 0.07397 0.02615 0 0.00428
( p' ?9 W. F* g3 F 90 0.08115 0.07877 0.07485 0 0.01405
7 _% j. _9 H6 a. l/ D* L 120 0.0656 0.07397 0.07885 0.00573 0.02143- \( E0 w# L2 z4 O4 Q
180 0.04488 0.0682 0.07135 0.0091 0.036232 y; }; n2 h. x5 d
240 0.03653 0.06488 0.08945 0.01828 0.05452
~; U2 O y4 {- C5 L! k7 E$ Z/ s 300 0.02738 0.05448 0.09098 0.0227 0.0597 ~9 h4 ~1 D7 v4 @" U
360 0.01855 0.04125 0.09363 0.0239 0.06495];
" x- k7 j7 i5 ~- }, Dk0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值) A% h& w* L; \/ e! M) Z* p/ h
lb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限) d6 t& @0 @% d; V" ?/ q3 [
ub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限% E/ T" h- F$ g, A! M
x0 = [0.25 0 0 0 0];. n7 B# R" t4 c! r0 p6 T' G+ ~( ^
yexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6] C# Q; ~) A+ {1 R- J+ E
% warning off
/ p% C- B, l( I. d3 Q- Z% 使用函数 ()进行参数估计
6 x4 X! C3 E/ @9 W6 e[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);6 k; M+ H2 e) N/ h' n, C; [& ]
fprintf('\n使用函数fmincon()估计得到的参数值为:\n')
u# G c5 A- f8 i* D z6 D+ Xfprintf('\tk1 = %.11f\n',k(1))
9 ]( e: }: [' r$ x# f0 O5 tfprintf('\tk2 = %.11f\n',k(2))
+ ?( x6 ?! S' W8 K' Tfprintf('\tk3 = %.11f\n',k(3))
! h: d% f) i: Y- [/ p/ b, b# X' Vfprintf('\tk4 = %.11f\n',k(4)). B% b: M Q: n7 L
fprintf('\tk5 = %.11f\n',k(5))
) o, p. a6 {' ?; v9 T S! }2 Jfprintf('\tk6 = %.11f\n',k(6))
+ q4 O6 d; _7 E; nfprintf('\tk7 = %.11f\n',k(7))
5 P0 P* r, I) ~1 @fprintf('\tk8 = %.11f\n',k(8))
) Y3 w3 z( ?: z) J5 B _" k/ ^. e/ tfprintf('\tk9 = %.11f\n',k(9))* `" B# }( K1 R
fprintf('\tk10 = %.11f\n',k(10))
3 r' r6 A; I. ffprintf(' The sum of the squares is: %.1e\n\n',fval)4 q# {& z7 C G
k_fm= k;+ T5 z" }% z y+ I' z" z
% warning off; N1 X/ k2 i9 J2 A3 B; j
% 使用函数lsqnonlin()进行参数估计
5 e' n& I' @3 R6 W/ Y[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
- }0 {8 h! q. H% z# W: p6 a1 q' a lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
' D- e) @, A1 R/ X# v3 Bci = nlparci(k,residual,jacobian);
. w3 w( X- {4 n2 y# L* Q9 y6 nfprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')( a! b' L& f7 J& {* C5 W
fprintf('\tk1 = %.11f\n',k(1))- ^* q w$ Q% d. Z5 ?+ }
fprintf('\tk2 = %.11f\n',k(2))6 e6 |+ \' i9 `6 S; K* y3 K. w* @
fprintf('\tk3 = %.11f\n',k(3))1 h# D8 \2 x3 J, k1 B3 y& j- W
fprintf('\tk4 = %.11f\n',k(4))
5 a. a3 V1 u5 p* a( x9 n8 Wfprintf('\tk5 = %.11f\n',k(5))
8 C9 o7 ~1 Y2 a, [5 c7 R0 lfprintf('\tk6 = %.11f\n',k(6))
8 |) W) p$ Y1 O3 l: {) q# ~* ufprintf('\tk7 = %.11f\n',k(7))- [% A E7 J! h7 Z/ ~+ s5 l1 \
fprintf('\tk8 = %.11f\n',k(8))
( ^7 f. M+ T! a$ s8 w4 Mfprintf('\tk9 = %.11f\n',k(9))
6 q- Z* t6 D+ tfprintf('\tk10 = %.11f\n',k(10))
7 ~( m& H, p- l1 f! B: Q. ~; hfprintf(' The sum of the squares is: %.1e\n\n',resnorm)
( B. X" K5 i" k$ {# sk_ls = k;
( T& |) o% M7 s+ I3 q# A% koutput
$ c8 H6 Q+ d) ^) qwarning off+ @- w7 j1 {: K" d! ]
% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计) [( m7 ^! a7 o' J6 n. d
k0 = k_fm;
2 {; z# v0 U/ \% e[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
* @2 s a" |4 U: Q7 p) _! [ lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); & [ t6 m* w8 X, h2 {
ci = nlparci(k,residual,jacobian);1 T) @% d" W- ]' G) e/ ^' X% S
fprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n')8 g% A0 R& V! n; c% p
fprintf('\tk1 = %.11f\n',k(1)). f1 u: `/ f6 R4 c' M
fprintf('\tk2 = %.11f\n',k(2))
; m5 R5 R C2 A! |; [' y D9 N) Ffprintf('\tk3 = %.11f\n',k(3))
2 R7 b5 D7 N. f' d" Z5 Sfprintf('\tk4 = %.11f\n',k(4))1 |$ s/ _* a! Y; ]
fprintf('\tk5 = %.11f\n',k(5))
4 m* B8 u2 A+ J1 Gfprintf('\tk6 = %.11f\n',k(6))5 [- \' F$ B% D: e
fprintf('\tk7 = %.11f\n',k(7))
6 x# G8 J; t' A4 ^* J5 _2 ofprintf('\tk8 = %.11f\n',k(8))
2 M8 K& r! |9 T( vfprintf('\tk9 = %.11f\n',k(9))- r% b6 D. n; l3 ^, q% P9 R
fprintf('\tk10 = %.11f\n',k(10))! I( y! ]: V3 p' {3 F
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)
2 a3 n8 A0 i) R+ m! t _k_fmls = k;/ }( \- ?: }% ^# g6 r. g# H
output
' ]/ l1 E* @8 p& Xtspan = [0 15 30 45 60 90 120 180 240 300 360];
4 o& N; ?( \6 z. x) ^[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls); + @6 t9 P7 B+ f5 e& k# A
figure;
b# z( u( ?9 _1 Aplot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real') z: @) v6 y* k5 i' {) D
figure;plot(t,x(:,2:5));
z1 ?% X2 \: l$ _6 {p=x(:,1:5)! x6 k& f- _- A6 l
hold on
7 w, D& W: B7 T# Uplot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')! q7 S( x" j; n/ B& ~3 T5 `
6 N. q1 [- n3 m& [' f- M3 D a7 y' }- w: m- ]9 H4 W, M+ }( {, |
4 q+ e2 a9 O3 E0 Jfunction f = ObjFunc7LNL(k,x0,yexp)! _1 d( P$ X3 \9 `( i& h7 O- w
tspan = [0 15 30 45 60 90 120 180 240 300 360];
# n, T4 @, X/ {2 d/ u[t, x] = ode45(@KineticEqs,tspan,x0,[],k); - C$ R9 A2 [" S! N; C
y(:,2) = x(:,1);
: u" X7 o$ z# W) r/ [, By(:,3:6) = x(:,2:5);
8 J* ?7 Z' R! c6 mf1 = y(:,2) - yexp(:,2);; V" |7 p, X3 r+ `
f2 = y(:,3) - yexp(:,3);' O7 F* {4 G% ?0 H1 ^6 m
f3 = y(:,4) - yexp(:,4);
1 m) p8 c& N( j4 J7 Pf4 = y(:,5) - yexp(:,5);
" ], F. @9 G4 @' x9 Z9 ]' e7 Mf5 = y(:,6) - yexp(:,6);
: G. `! ]- L3 }: R. |8 \f = [f1; f2; f3; f4; f5];; e8 N# }; r( B7 F
! k$ N* [5 _5 q1 S) x N
1 T* l; s0 s8 X5 T2 D
6 s& v% p7 i/ q5 z+ ]& {function f = ObjFunc7Fmincon(k,x0,yexp)1 m# r& E) Y7 Z7 c3 v% V
tspan = [0 15 30 45 60 90 120 180 240 300 360];
1 r6 G4 C$ |+ `8 A: a[t x] = ode45(@KineticEqs,tspan,x0,[],k);
5 c( E5 o6 u/ w) k' S2 p0 N9 Ny(:,2) = x(:,1);
/ E$ ~; ]! { F2 |% w4 Ay(:,3:6) = x(:,2:5);1 F3 H5 ?) F+ t7 a+ Y( u. H
f = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...+ e/ |! S* e6 v" M4 }
+ sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...
* u$ t5 ~3 ~0 Q- Y3 E) b( P q( n + sum((y(:,6)-yexp(:,6)).^2) ;& C. a, s( J3 A
. f7 O+ r s& b0 o- c& e. }$ N* b! q; d# _9 u6 v# l
; Y$ X8 \: h0 U6 l
# {) |' c- C F6 @2 lfunction dxdt = KineticEqs(t,x,k)
! P- o; \+ ?4 e! v0 f" EdGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);
6 m8 c' b" k! r/ `' g4 rdFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);$ j- \% s8 o5 @% \3 b+ f: {
dFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);
P+ g3 k; ~! |7 J& `) c1 OdLadt = k(7)*x(5);
T9 N6 e, l4 e" @dHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);
$ V! P* k0 N2 f2 r# Fdxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt];
' p4 U- P- u" J. c; l
; b$ t) n, U% d9 a2 Y: m( D" b1 m0 ^; A: {
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Glc.zip
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