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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit
9 P& b3 t4 @( m- ^9 v( \% Z% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k4& _$ a; V f6 e q8 s, `
% k6->k6 k7->k7$ I" X2 y# ~6 I+ o1 M$ [; A
% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);
. a0 h- B: N* m( ~+ _ \7 {% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);
+ J: _% C1 f1 [% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);
$ }! D% e/ ^8 e9 w4 F* ~4 n4 v% dLadt = k(7)*C(Hmf);
4 C8 @! E2 p9 K( ?: S' ^3 R: P%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);3 i! ? B6 |+ O& U) C# c
clear all
8 y2 \0 A' A+ C5 L1 \clc
+ l# h5 }* F% L$ hformat long5 M* m: b- q1 ], ?( q! Q' _7 n
% t/min Glc Fru Fa La HMF/ mol/L
; P! I6 [1 y, c Kinetics=[0 0.25 0 0 0 0) @6 b" c6 U! e" g$ N" [, B
15 0.2319 0.01257 0.0048 0 2.50E-04; h6 v% P: {. f4 R5 e' |6 d
30 0.19345 0.027 0.00868 0 7.00E-04
, |5 ?' _. ^) v9 Z 45 0.15105 0.06975 0.02473 0 0.0033
8 X+ R, _& O; o2 R" I S 60 0.13763 0.07397 0.02615 0 0.00428
% C" ?- C# F! o5 e# G/ n 90 0.08115 0.07877 0.07485 0 0.01405
4 H8 s& b3 v* \& B# q0 p 120 0.0656 0.07397 0.07885 0.00573 0.02143. s" T6 T2 @0 }6 S, Y
180 0.04488 0.0682 0.07135 0.0091 0.036234 }7 F2 N9 y2 X. ^% m
240 0.03653 0.06488 0.08945 0.01828 0.054521 `. o9 [! m* ]2 k1 p7 ^
300 0.02738 0.05448 0.09098 0.0227 0.0597' \+ c+ r" \4 E6 H
360 0.01855 0.04125 0.09363 0.0239 0.06495];
( R/ I6 m0 c( a, o# l# pk0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值2 a/ l1 w$ |# L9 g1 W$ c# M' j1 r
lb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限( T# Z# E' d# s. A9 S
ub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限
& {9 s* _4 [; d2 m7 px0 = [0.25 0 0 0 0];
: D1 J" N4 D7 i% d Ayexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6]
/ s4 t o4 d, Z5 l% u) [$ ]% warning off
" [, k+ K( m( T% ]& M6 W% 使用函数 ()进行参数估计
; r. Q2 V4 F* \[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);
. r' o1 W& Y+ \fprintf('\n使用函数fmincon()估计得到的参数值为:\n')
7 e% r0 o1 K9 Q3 e" H8 C) _7 n1 P% ]fprintf('\tk1 = %.11f\n',k(1))
. K' [2 G5 r; D: k% x2 m' C. Y, Efprintf('\tk2 = %.11f\n',k(2))
/ F/ o8 O9 |9 Xfprintf('\tk3 = %.11f\n',k(3))
+ x; y0 i, n# I9 g% v$ Q+ gfprintf('\tk4 = %.11f\n',k(4))
! T/ f7 {- a. e% A2 f# v1 \fprintf('\tk5 = %.11f\n',k(5))( v' Z. e; x* A) s
fprintf('\tk6 = %.11f\n',k(6))" a# V( X7 O% y _9 r/ q
fprintf('\tk7 = %.11f\n',k(7))3 D: B5 ]3 X1 |8 v
fprintf('\tk8 = %.11f\n',k(8)), \# d$ l7 U( n# s
fprintf('\tk9 = %.11f\n',k(9))
|0 u z5 k* r- @fprintf('\tk10 = %.11f\n',k(10))
4 B' _/ p' e8 B9 M8 wfprintf(' The sum of the squares is: %.1e\n\n',fval)
* M' I$ f" @0 L- ` K* Ak_fm= k;
( X/ U4 F O; k" [1 ~# i% warning off
" ^& [$ c' W/ y1 i& h5 x% 使用函数lsqnonlin()进行参数估计
) P* F8 O" M# z! {$ [9 L. d[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
: c- k5 P! T/ m& L: C# b/ W lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
) k- \; q+ b$ B4 V% q8 ~: Lci = nlparci(k,residual,jacobian);
$ o" R0 v# H9 N: n, D! Ufprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')/ ?! I# D! `7 Q
fprintf('\tk1 = %.11f\n',k(1))
! ~$ o7 t+ Q: t% y7 Q- @) sfprintf('\tk2 = %.11f\n',k(2))
5 _' E8 w# m- f! V3 o9 t9 Sfprintf('\tk3 = %.11f\n',k(3))
" h m2 s, d1 A& f& }4 Yfprintf('\tk4 = %.11f\n',k(4))
6 ]; ]' [( z7 qfprintf('\tk5 = %.11f\n',k(5))
# F8 {7 I' I6 a: hfprintf('\tk6 = %.11f\n',k(6))
$ v" }7 }/ k4 I/ _! q3 zfprintf('\tk7 = %.11f\n',k(7))$ q/ E- f0 _2 @4 G6 d9 h: B$ g
fprintf('\tk8 = %.11f\n',k(8))
( l: b4 P5 p7 S; d& Mfprintf('\tk9 = %.11f\n',k(9)): \2 Z. k4 U: f8 Y* }8 E7 z
fprintf('\tk10 = %.11f\n',k(10))$ t* Z0 p! m/ ^) x5 F2 y9 ^
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)' y2 H" }& Z. }7 k% {9 r* l
k_ls = k;
9 P% S! b# c: Y- Poutput6 X2 J* V$ @9 A
warning off6 P2 b- ^, o2 f
% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计
4 t C2 |2 X+ Zk0 = k_fm;
. J0 n- G9 |0 Y1 w[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...- }. |. a8 H' T, U% M }
lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
, a) a- ~, P( x8 R* z% lci = nlparci(k,residual,jacobian);
* w6 i" E1 p9 R. X) ?fprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n'). G+ e& P) [' L, P% `
fprintf('\tk1 = %.11f\n',k(1)): L% U! Q) R% h6 t8 ~$ J
fprintf('\tk2 = %.11f\n',k(2))
& y, ]# ]7 p9 N6 [7 a* n8 l, p) Xfprintf('\tk3 = %.11f\n',k(3))
) c8 g5 W: N c, P2 Y; Ofprintf('\tk4 = %.11f\n',k(4))1 r# X' N( Q' p
fprintf('\tk5 = %.11f\n',k(5))
# k1 V0 E2 t# P( b/ Ufprintf('\tk6 = %.11f\n',k(6))
9 a7 M8 W0 v0 }6 k2 Mfprintf('\tk7 = %.11f\n',k(7))0 w4 k0 a/ |* }6 O6 m% W& S
fprintf('\tk8 = %.11f\n',k(8))2 L, j; D7 D: H: p
fprintf('\tk9 = %.11f\n',k(9))' w+ l* b. p6 h7 U3 Q
fprintf('\tk10 = %.11f\n',k(10))
9 P, h. [8 ?4 Q8 ]/ d/ o' zfprintf(' The sum of the squares is: %.1e\n\n',resnorm). J4 F5 i d9 f' F8 `6 ]
k_fmls = k;% `, C, n0 y9 J0 _7 Y4 ]% _8 {
output
4 n) v5 o9 A) G) L' Z& H# W: ~tspan = [0 15 30 45 60 90 120 180 240 300 360];. V# `+ C; o" g2 V( _
[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls);
1 W2 w. M0 d2 Yfigure;7 f( k- m) J* w
plot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real')) V% l j& H3 z' q+ M
figure;plot(t,x(:,2:5));
( s: G# [! C, M9 Xp=x(:,1:5)
& H$ j' ^2 P; \: Z8 ohold on9 i2 m7 p8 Z& c* B& U3 e
plot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')% @0 b/ o% x0 }& `8 V4 I
8 g6 i4 G9 |2 F+ X6 p6 v V* u- y7 |/ E$ Z! j
9 z2 H$ B- @, G7 j# {# ]function f = ObjFunc7LNL(k,x0,yexp)
% m0 } _% _# Ntspan = [0 15 30 45 60 90 120 180 240 300 360];2 o1 Z( T3 v) |, C/ [
[t, x] = ode45(@KineticEqs,tspan,x0,[],k); 6 E5 _0 }1 c& a5 v, X
y(:,2) = x(:,1);
" X2 }5 u% j) M* f+ ry(:,3:6) = x(:,2:5);
m$ ` A b8 A7 yf1 = y(:,2) - yexp(:,2);" m% E+ w3 ]4 y7 A
f2 = y(:,3) - yexp(:,3);
! d3 ~6 h$ B9 U0 o; j& |f3 = y(:,4) - yexp(:,4);& d: j) ]% D# H1 N9 T* R0 H ~
f4 = y(:,5) - yexp(:,5);
( E( t& b9 U7 ?7 ?4 f) i3 Gf5 = y(:,6) - yexp(:,6);9 n9 k* q2 u7 n& @# R
f = [f1; f2; f3; f4; f5];
0 s. w9 b9 }' X; L
$ H f, n/ W0 I: I: T9 T1 x
$ y) E: h% K7 O& {- S
3 k2 F3 Y+ w( f9 N+ ]% @function f = ObjFunc7Fmincon(k,x0,yexp)4 s) [2 G2 u0 E j
tspan = [0 15 30 45 60 90 120 180 240 300 360];
) }5 C9 f" L1 b9 z7 t[t x] = ode45(@KineticEqs,tspan,x0,[],k); ; }) l W4 i: S L7 ^+ Q
y(:,2) = x(:,1);& H Z* s; A* l$ Q# @
y(:,3:6) = x(:,2:5);
' r7 v3 Y7 J4 j3 S. k* xf = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...
+ Q- D1 ?$ p4 S( j, M + sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...
4 T4 W( Q* {3 K$ g3 X! r4 o( l + sum((y(:,6)-yexp(:,6)).^2) ;
' @6 V" Q( B( w2 D$ s( R ] Y& ~% p0 T. ~* c
5 c# g* H* h( x' v
! d9 p4 z6 U: `- Z, {: V5 ]) D/ z4 N' X" |" t; K( h% N
function dxdt = KineticEqs(t,x,k)
+ n4 }8 n7 k! mdGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);
9 i. d/ a, k1 O, J( JdFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);
: i3 X b+ g- z5 ^! h+ P$ T, KdFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);0 v* t" j- P- M
dLadt = k(7)*x(5);8 e J4 n& \2 b5 `$ W9 f8 q* Q
dHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);
+ a5 s% t* \8 f6 d, b: y! A6 ^$ Wdxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt];
6 g* n5 W% z4 N6 u( L3 Y' D5 V/ V# }+ `! S, ?1 \6 a; K1 ]1 h6 B
! y0 h) P8 l: U4 A; _, n+ @& o |
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