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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit
+ C0 r1 s) v# z. [: n% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k4
1 w ?& x. L% Q8 f% x% k6->k6 k7->k7
0 u) o* p8 k7 {( u) I+ L% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);% u T9 |# J( W' u1 S
% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);
& M1 p' q# \, O y( H$ Q, T5 {2 I% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);
6 `% }% m ^- y$ F% dLadt = k(7)*C(Hmf);* ]7 v- G$ F+ e5 c$ w( o
%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);
4 G1 I( u; M" p6 {" Tclear all, ~9 [2 E% Z8 i" H7 R$ W% J
clc% Y$ K4 v1 A' w
format long. V; h: Y& M2 q* j
% t/min Glc Fru Fa La HMF/ mol/L
2 _3 H0 `- k) w1 r. ] Kinetics=[0 0.25 0 0 0 0
: b, F1 E; H- ^9 V9 C# {& a 15 0.2319 0.01257 0.0048 0 2.50E-041 j i @$ X! L8 X, Y5 o* E
30 0.19345 0.027 0.00868 0 7.00E-04
$ y; K6 u8 {- h6 N& t 45 0.15105 0.06975 0.02473 0 0.0033
5 H$ J+ ^% W. O0 `5 x 60 0.13763 0.07397 0.02615 0 0.00428
& G3 |5 g4 s. C% Z3 F0 e 90 0.08115 0.07877 0.07485 0 0.01405% F" n, @) h$ ~6 Z( K
120 0.0656 0.07397 0.07885 0.00573 0.02143
+ i" [" l- c: z0 {+ L9 a; B& r 180 0.04488 0.0682 0.07135 0.0091 0.03623- O- L N! J' M. f" X) l
240 0.03653 0.06488 0.08945 0.01828 0.054523 \6 P4 ~. c9 Y O$ ~, I
300 0.02738 0.05448 0.09098 0.0227 0.0597
- t' i6 |" p0 e) F1 e, R; Z 360 0.01855 0.04125 0.09363 0.0239 0.06495];8 K# A. Q% H1 h- q
k0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值" A3 K. R* U- j5 g- T& \1 [
lb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限
0 P7 @' C; ?0 g+ N2 Y. j! uub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限8 Y* C, D' Z0 E- D' ]
x0 = [0.25 0 0 0 0];2 j% t2 `) Z2 Q) E- k
yexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6]- F' @/ m# v6 w9 R! o
% warning off7 c1 ]6 U9 b, W9 t* d W& e/ ]4 Q
% 使用函数 ()进行参数估计
+ v. |6 E8 N9 z% c/ m[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);
" w6 m' b: o8 |; ]* W5 D8 V; Pfprintf('\n使用函数fmincon()估计得到的参数值为:\n')
2 ^2 ^) }1 b, n/ N3 c( wfprintf('\tk1 = %.11f\n',k(1))
3 @* e7 ^$ E/ S+ P8 ]1 s9 _% X8 Q# |fprintf('\tk2 = %.11f\n',k(2))
+ U+ T6 M* ]/ ?# h0 Nfprintf('\tk3 = %.11f\n',k(3))( ] |! V& V/ v
fprintf('\tk4 = %.11f\n',k(4))
& s, y: `! g( }0 m: U3 J( ufprintf('\tk5 = %.11f\n',k(5))
% v) s5 R- a+ a& `+ Lfprintf('\tk6 = %.11f\n',k(6))
, u5 e# |& V- d9 }( L: cfprintf('\tk7 = %.11f\n',k(7))
e @6 h" I* g" Q9 ^fprintf('\tk8 = %.11f\n',k(8))
i' A* Y& t2 k* V# u* cfprintf('\tk9 = %.11f\n',k(9))
' s- b! X9 n7 T2 T$ r" c. |fprintf('\tk10 = %.11f\n',k(10))" q# N2 }1 R1 [+ q$ {
fprintf(' The sum of the squares is: %.1e\n\n',fval)/ t2 M6 T5 o$ U/ t1 F8 u" q
k_fm= k;
0 g8 b7 |% J7 Y% ~5 M6 Z) _! A% warning off
) c Z3 l" b4 E/ a- l% 使用函数lsqnonlin()进行参数估计' |' o: V/ J7 q6 s4 ?
[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...4 c; K' R9 t$ F: `
lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); " \) C( b3 r, f8 C' {7 a$ R
ci = nlparci(k,residual,jacobian);# d/ L4 g# n, N: Q" ~* |1 ~
fprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')
8 e9 t2 [! R' x {fprintf('\tk1 = %.11f\n',k(1))
' H# ? O" ^* Z( D _fprintf('\tk2 = %.11f\n',k(2)); C$ v& P, Z7 @- G) X& l8 i
fprintf('\tk3 = %.11f\n',k(3))4 A# S; c/ Q+ @2 i! a
fprintf('\tk4 = %.11f\n',k(4))
; i9 e b9 n$ H. h2 ~+ tfprintf('\tk5 = %.11f\n',k(5))' E- P5 F* ?: M$ F, f f% X* E
fprintf('\tk6 = %.11f\n',k(6))/ f8 P( T( K4 T+ b8 @
fprintf('\tk7 = %.11f\n',k(7))( W$ W$ m+ e k% W
fprintf('\tk8 = %.11f\n',k(8))
" p, U7 t( {" sfprintf('\tk9 = %.11f\n',k(9))
1 Q* j9 }& Y" w& `( b9 y. p+ [* d vfprintf('\tk10 = %.11f\n',k(10))- \3 t6 `5 L8 l# O5 ]( E
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)) x2 b, B- \/ Z! v
k_ls = k;9 O0 U8 o7 x s7 `" h$ R
output
! F2 [/ {' F: @7 |/ [# h/ |3 n5 zwarning off
2 R8 H, F- K# j+ R" [0 \" R! D Y" R$ E% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计' F: J1 ?( z, z* u
k0 = k_fm;
# N! [; X, B5 m6 Z' Y4 m( |7 M8 `) r" I[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
% Z" h. ?, e h3 z lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
* A2 Y: S/ R% n3 x) s! S# Uci = nlparci(k,residual,jacobian);/ o7 Q' B+ B+ B3 I8 G/ E
fprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n')
$ q5 \; V2 j+ ]' L X# u' Wfprintf('\tk1 = %.11f\n',k(1))( @5 s4 i8 W2 s- P/ P
fprintf('\tk2 = %.11f\n',k(2))
- H( L' S7 ^' v& jfprintf('\tk3 = %.11f\n',k(3))
5 k% B( z! T0 n. Y' d2 Pfprintf('\tk4 = %.11f\n',k(4))
0 w- ?, E' @& a- ~5 {0 Hfprintf('\tk5 = %.11f\n',k(5))
- \- r7 q I7 d, a6 B6 }4 j; j8 h/ Bfprintf('\tk6 = %.11f\n',k(6))
; V2 k( c6 n0 R- Z, I& ]fprintf('\tk7 = %.11f\n',k(7)); C: ^0 l- E! k
fprintf('\tk8 = %.11f\n',k(8))* b+ U+ K# h6 x0 m) E
fprintf('\tk9 = %.11f\n',k(9))4 A+ n ]- k8 n( }
fprintf('\tk10 = %.11f\n',k(10))
( N( j! Y5 \ N/ Hfprintf(' The sum of the squares is: %.1e\n\n',resnorm)
V- e# l. g1 Q! U9 Ck_fmls = k;$ u7 Q$ C6 O+ k! l: h
output
2 J7 ]. L) X% ^7 Ktspan = [0 15 30 45 60 90 120 180 240 300 360];( m& R( K' i& d' ]3 V2 ]: \# G
[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls);
% e# e: y2 z9 r. y4 r+ r% rfigure;
- |$ R g9 m2 W- ?) oplot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real'), {1 {- }7 h, ^! h" s% l
figure;plot(t,x(:,2:5));/ H2 z' k, l1 j# @$ }0 N0 L" Q
p=x(:,1:5)
# j+ Y- [. {: T* e, R* d3 O( Mhold on( f2 O0 t# G* K8 o
plot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')
, `: u1 N- q" k; ?3 K# \! c5 n9 g' \5 R! V+ f
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function f = ObjFunc7LNL(k,x0,yexp)" \0 J* K, j$ o# H; G1 c+ \
tspan = [0 15 30 45 60 90 120 180 240 300 360];
3 F, W/ ~" |# T% i; t" f8 m& V[t, x] = ode45(@KineticEqs,tspan,x0,[],k); 7 c% t }! y) T* ~0 D0 D* p
y(:,2) = x(:,1);
3 U0 |# x) ^/ o# ? H, Ty(:,3:6) = x(:,2:5);1 P5 i' P+ ?8 O4 v' j
f1 = y(:,2) - yexp(:,2);
z9 n2 v$ E+ [" ^" C s i0 `+ {f2 = y(:,3) - yexp(:,3);5 {. Y/ v; t5 h8 B8 r4 s
f3 = y(:,4) - yexp(:,4);
4 Z- t; i& v% Y! m/ U9 o$ i2 Ef4 = y(:,5) - yexp(:,5);
; {" D7 f9 b! @( [6 Qf5 = y(:,6) - yexp(:,6);0 |5 X! S; ~+ c( [% b. |! g& P$ k
f = [f1; f2; f3; f4; f5];
2 D( u) a: B" T: N A' u3 ~3 V0 B2 H4 t7 p1 f! H% n/ @
- c# T" m8 @& Y/ \) z
+ F* S! D6 F' ?/ ufunction f = ObjFunc7Fmincon(k,x0,yexp)
3 @& F& x2 K" n- n+ M" gtspan = [0 15 30 45 60 90 120 180 240 300 360];% k$ B( S3 @! u8 C9 H* O
[t x] = ode45(@KineticEqs,tspan,x0,[],k); . x6 N8 w# _* n/ A6 o
y(:,2) = x(:,1);
& y! x+ c8 k; r& S* U+ Oy(:,3:6) = x(:,2:5);4 v5 E: A6 F& W0 ~; q0 x
f = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...* Z: p0 B+ X, E+ k/ O8 K
+ sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...; k$ W# k9 Y* @( s1 F9 T9 J! K
+ sum((y(:,6)-yexp(:,6)).^2) ;; h' ^' N! J( z G8 B
1 i* b3 \5 W3 @5 p5 S1 h
$ u$ e2 ~% g! ^, U) c7 d. C+ }' q9 D( e, y6 x3 m
d! g. B; r% {( m7 [
function dxdt = KineticEqs(t,x,k)
1 L( p8 l# _" z& v" o8 G ]dGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);
$ d( N0 r3 ~; L9 s+ Q' Z) b' edFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);
$ \' F2 G L! A7 }dFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);* [- m7 a& U- \! }( l
dLadt = k(7)*x(5); q5 w, w, K( l! z' ~: j% d
dHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);
* q, A9 k* ]1 {5 b( u* O/ `6 P" cdxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt];
0 O& l1 d6 j: s5 F/ X, \ Q- X/ k a0 k! q6 N
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Glc.zip
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