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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit" I' U9 B/ A A9 n4 r
% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k46 d, g: F6 O' K7 I, r3 {/ h
% k6->k6 k7->k7
, t( |1 |; ~4 ?1 ?) M% v% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);
I/ i# t) ]! G7 W* q& d8 R- `% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);$ P7 ^0 N- K% X9 x4 e& E+ G
% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);
& A4 |/ I: G3 ^+ Y% P1 H3 n' c5 a' o% dLadt = k(7)*C(Hmf);( A0 W6 Y1 J/ a# p5 ]
%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);7 Q4 X7 d( ~ f) j* T/ b
clear all
4 r' O% a9 r/ \5 a0 H0 @& R% vclc
! d* `0 M: E. L: x$ }7 Aformat long
* |* I% l0 X4 A$ D: b9 u% \8 m% t/min Glc Fru Fa La HMF/ mol/L ( v! C3 O* a* e3 F5 R }. T& x3 p! t
Kinetics=[0 0.25 0 0 0 0
5 b4 }3 [# l1 k- A# R- K" k v6 c 15 0.2319 0.01257 0.0048 0 2.50E-04
+ ?5 c, q; w: O2 l* a 30 0.19345 0.027 0.00868 0 7.00E-04 I8 }( {6 J9 K4 D4 \. L3 U
45 0.15105 0.06975 0.02473 0 0.0033 K" `. g' }6 d& H( A6 W
60 0.13763 0.07397 0.02615 0 0.004287 C6 x. Z' _" p% w
90 0.08115 0.07877 0.07485 0 0.01405+ ]% f3 {; |1 ~# @6 u
120 0.0656 0.07397 0.07885 0.00573 0.02143! g* }: C7 U% k4 Y
180 0.04488 0.0682 0.07135 0.0091 0.03623
6 U v0 u4 O/ R% B' I 240 0.03653 0.06488 0.08945 0.01828 0.05452
* o7 n) o- w' T+ `: M6 R8 B9 `" y 300 0.02738 0.05448 0.09098 0.0227 0.0597# T! Q w9 F& s& V2 o
360 0.01855 0.04125 0.09363 0.0239 0.06495];
" ?( [* {2 H" g( Bk0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值/ m4 _; K. B4 A( N
lb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限
# I/ b) O N8 B: ~7 p* J1 Wub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限8 o, c' [6 R" `( U* s4 p
x0 = [0.25 0 0 0 0];
1 P; I- F& v- h- `9 I6 R) b8 Cyexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6]
9 [* I3 Q( ]6 Q- j. a$ G5 o% warning off
( `- Y" H9 w, X- F8 d% 使用函数 ()进行参数估计8 | t6 b# J7 R0 ]! }% q
[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);
' K# p9 Z% u5 I9 N) l5 b% Efprintf('\n使用函数fmincon()估计得到的参数值为:\n')& S) a7 B0 x. S5 [- k# ^! r7 F
fprintf('\tk1 = %.11f\n',k(1))
D' h* l" H: J. wfprintf('\tk2 = %.11f\n',k(2))
* A9 g. U8 X5 W# x; Y8 Qfprintf('\tk3 = %.11f\n',k(3)): F4 d6 h9 U9 T& L5 r; o
fprintf('\tk4 = %.11f\n',k(4))" T l9 \- X& `0 A; e
fprintf('\tk5 = %.11f\n',k(5))$ h$ C4 K+ K% O( Q( X4 t7 C3 {& y
fprintf('\tk6 = %.11f\n',k(6))4 s: I; f' T! o! o3 Y3 v
fprintf('\tk7 = %.11f\n',k(7))( z5 D! D' r) E1 f @$ p
fprintf('\tk8 = %.11f\n',k(8))1 \0 c/ f% Z( ]" L) J) i# s9 R. q
fprintf('\tk9 = %.11f\n',k(9))/ r. P: W) A/ e' P
fprintf('\tk10 = %.11f\n',k(10)); b* o" C& t+ E
fprintf(' The sum of the squares is: %.1e\n\n',fval)- D8 W# S3 Q+ ?. X( e
k_fm= k;3 j! m& U- ^, H( O* o; F8 x
% warning off& _1 x& I5 @: Q" w3 k
% 使用函数lsqnonlin()进行参数估计9 C" f( w0 f4 D0 b8 I
[k,resnorm,residual,exitflag,output,lambda,jacobian] = ..., d* {# H& M# P% Z
lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
- g. T$ X. i; R; n; ^9 k# v4 Nci = nlparci(k,residual,jacobian);: Y# ~+ G) U0 t; J
fprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')
, p' t. I' @3 |; T9 o5 efprintf('\tk1 = %.11f\n',k(1))
; z% v: t9 {9 @: Q2 a- t; |$ c4 mfprintf('\tk2 = %.11f\n',k(2))
% I3 i! p0 d* {" t+ hfprintf('\tk3 = %.11f\n',k(3))' A( N, X9 G4 u6 {- J; s
fprintf('\tk4 = %.11f\n',k(4))! m8 [, w; b3 j4 j' s$ V6 \
fprintf('\tk5 = %.11f\n',k(5))
0 k7 M! N% g, S+ lfprintf('\tk6 = %.11f\n',k(6))4 ^* q+ l# e4 P* b# A
fprintf('\tk7 = %.11f\n',k(7)); w! F5 @# G9 w4 Y$ s$ K$ i
fprintf('\tk8 = %.11f\n',k(8))& [$ i% V0 x% r$ Q
fprintf('\tk9 = %.11f\n',k(9))7 `; g1 z; x: ]# a% w( p2 y2 T
fprintf('\tk10 = %.11f\n',k(10))
9 Q+ p$ z/ d- }6 S. o: G' Ufprintf(' The sum of the squares is: %.1e\n\n',resnorm)' {4 q# w7 c, r# D5 x% q! e
k_ls = k; o1 C& Q6 x7 ]& S; @4 q& {
output
f: b S' T! t( ~- u# jwarning off
( X5 G: {# P) r' z8 d8 F% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计
3 g( Q- n# Z3 n) X4 Ek0 = k_fm;+ ?$ S, {" F" R) l9 H- x4 e/ P( g: @5 B
[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
! P; v/ U( Z2 [$ y+ w; _ `2 B lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); / A0 s+ c; }; f4 Z2 ?
ci = nlparci(k,residual,jacobian);- l% F& H: o9 _" ^
fprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n')3 @; x4 {- C: _- G
fprintf('\tk1 = %.11f\n',k(1))
9 ]) P* J+ b( O4 @& ~8 m! w6 Zfprintf('\tk2 = %.11f\n',k(2))
* E2 Z$ U# V! h) Z8 ]6 qfprintf('\tk3 = %.11f\n',k(3))
" k7 N( M/ k/ G7 h) P$ w: sfprintf('\tk4 = %.11f\n',k(4))
+ [# b/ O6 B' L( u2 |# Lfprintf('\tk5 = %.11f\n',k(5))
6 p6 t4 D7 I: ~ G) Y9 pfprintf('\tk6 = %.11f\n',k(6))
+ J! M# t! K' ?fprintf('\tk7 = %.11f\n',k(7))' t/ z% D, L% O2 y$ B
fprintf('\tk8 = %.11f\n',k(8)): l. T% T/ c4 `, z. K C
fprintf('\tk9 = %.11f\n',k(9))
0 L4 q0 e1 l" H" X0 kfprintf('\tk10 = %.11f\n',k(10))
5 c6 ?' ^$ y7 F9 e7 E9 \( Y, rfprintf(' The sum of the squares is: %.1e\n\n',resnorm)9 ^) ]' e( s2 q8 {! K4 n. c. W. d& `5 W3 g
k_fmls = k;$ L: K5 ^ _. _ q2 r
output
. z( u$ r- v [* Q+ I, @% ~tspan = [0 15 30 45 60 90 120 180 240 300 360]; e( J& ]$ G4 y5 e2 C9 q+ D
[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls);
" W: h8 {, T, V/ x. `figure;
! j* A9 d% a2 Jplot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real')
- p, V1 T' i) J |figure;plot(t,x(:,2:5));
4 g) k/ w. |3 k, B& _p=x(:,1:5)+ ^7 p" t6 N1 s9 W
hold on$ n( O5 b4 r2 Y( ^8 D& @& S
plot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')7 \ x3 K! ?8 a( |: Z
- g: @# t: p2 C$ X9 Z: z* X9 v
. |# ?4 Y7 v; M% [# j! A7 Z, [2 i# E$ z3 [. H# s* Y! S
function f = ObjFunc7LNL(k,x0,yexp)
5 P. V! j- x5 r" M, ftspan = [0 15 30 45 60 90 120 180 240 300 360];
& Q `9 W% m( l4 s0 h[t, x] = ode45(@KineticEqs,tspan,x0,[],k); ; m* X% v# V6 f+ S, h0 \1 j/ _
y(:,2) = x(:,1);) n# v+ m7 I/ n [" m$ C9 _
y(:,3:6) = x(:,2:5);! l! ]) _8 h- s/ X
f1 = y(:,2) - yexp(:,2);
, G! C3 h8 v& d/ z7 vf2 = y(:,3) - yexp(:,3);& F: y- L& h6 N
f3 = y(:,4) - yexp(:,4);
# M8 i, T- X8 v. {3 Wf4 = y(:,5) - yexp(:,5);9 u( e, e, u3 V; Z3 |$ k S2 n
f5 = y(:,6) - yexp(:,6);6 I- j1 M, N, p$ N- M
f = [f1; f2; f3; f4; f5];3 p) A4 q- c2 t1 e4 `
9 U) T/ R; C, @4 k
1 ]/ r* c6 {+ |2 G
: t1 y; S% Y* k; i. j
function f = ObjFunc7Fmincon(k,x0,yexp)1 Y& i, N3 G; @7 q& a: i. ^- f
tspan = [0 15 30 45 60 90 120 180 240 300 360];
5 h- v F! N) t6 `5 P[t x] = ode45(@KineticEqs,tspan,x0,[],k); ' s- f \) v- Q! ?4 L
y(:,2) = x(:,1);
) {# f y I+ [3 w8 Vy(:,3:6) = x(:,2:5);; `6 I- ~- H) n [
f = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...
( |$ H4 ~' H4 V4 l/ N+ G+ [# X* V + sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...
/ l, T" V! J/ D- d, S4 e7 k + sum((y(:,6)-yexp(:,6)).^2) ;5 S+ v# P; O4 i% {4 Y
$ t- z/ H3 C% |$ O9 W
5 k9 h6 C/ C/ `' C0 T+ ~% r
6 r' c- X P d' {' t' P! O& l3 ~2 m6 L# c: M
function dxdt = KineticEqs(t,x,k)2 k ^1 s% o; \% K0 |- ]
dGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);
6 p! A; z! u& y4 O8 odFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);( \ G+ c, R- P
dFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);
; L* H$ V$ P k2 W$ s/ r+ Q, SdLadt = k(7)*x(5);
3 g$ f9 ~9 B; I$ RdHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);5 }# a# ?5 h* Z7 n* o+ y+ ~. M, Q
dxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt];
3 Z. N7 u: Y1 C& z
9 M" p9 p; g9 e" ?; Z* s2 _# u* l h8 {! F; ]
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Glc.zip
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