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升级   87.37% TA的每日心情 | 无聊 2015-10-10 18:19 |
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签到天数: 24 天 [LV.4]偶尔看看III
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10体力
function parafit [7 N2 A+ \6 Y; \
% k1->k-1,k2->k1,k3->k2,k4->k3,k5->k4
# ?' k" b7 J# Z+ h3 y/ ~% k6->k6 k7->k7' i/ ^! h- n) F B' R; S
% dGlcdt = k-1*C(Fru)-(k1+k2)*C(Glc);! J- t3 O; y. C O/ P' z- A: `' W& `* D
% dFrudt = k1*C(Glc)-(k-1+k3+k4)C(Fru);
7 d1 s4 ?. O" U7 R; S5 L% dFadt = k(2)*C(Glc)+k4*C(Fru)+(k6+k7)*C(Hmf);
5 t7 q8 D$ P2 `. `; o" E- s* B- H. M% dLadt = k(7)*C(Hmf);
G- V z% C( ?% ~7 y%dHmfdt = k(3)*C(Fru)-(k6+k7)*C(Hmf);; |& u# S3 v7 D; L
clear all
) u" J/ m4 F7 J; i Mclc
7 K" T( f! b+ x/ f G/ Jformat long
4 l# q* ^; L: ?/ j% t/min Glc Fru Fa La HMF/ mol/L
3 l+ a* d8 l* F6 H3 a! i Kinetics=[0 0.25 0 0 0 0
- u" C1 I0 v( D7 } 15 0.2319 0.01257 0.0048 0 2.50E-04) N) C: L' R& f+ B! q' [5 c2 [- c
30 0.19345 0.027 0.00868 0 7.00E-04
' K8 U9 I- h8 U: W 45 0.15105 0.06975 0.02473 0 0.00334 p u2 Y# ]& k9 U. x
60 0.13763 0.07397 0.02615 0 0.00428' z/ I/ B! Z& U1 f+ X. U" C
90 0.08115 0.07877 0.07485 0 0.01405+ l# U9 U* v( _0 m+ f
120 0.0656 0.07397 0.07885 0.00573 0.02143
' E; _. i% W. J9 S6 O0 q 180 0.04488 0.0682 0.07135 0.0091 0.036235 G Y5 |, ]# d. K, Y
240 0.03653 0.06488 0.08945 0.01828 0.05452
8 t6 \4 n' \0 O# ^% r 300 0.02738 0.05448 0.09098 0.0227 0.0597
% k1 k( a5 a' X5 X v2 F/ i: t# [' G- d 360 0.01855 0.04125 0.09363 0.0239 0.06495];; m: j' m# z) D3 H0 e r
k0 = [0.0000000005 0.0000000005 0.0000000005 0.00000000005 0.00005 0.0134 0.00564 0.00001 0.00001 0.00001]; % 参数初值
( \' W0 D3 o- F4 z% K# _! flb = [0 0 0 0 0 0 0 0 0 0]; % 参数下限
) p2 z; q8 A% { v' ]1 zub = [1 1 1 1 1 1 1 1 1 1]; % 参数上限" Y, @" }. ?6 Z, ~: ?
x0 = [0.25 0 0 0 0];1 g& I: X8 j+ o
yexp = Kinetics; % yexp: 实验数据[x1 x4 x5 x6]2 x" C' i J% D7 o- m- P7 N: t& _+ U& K
% warning off0 E. a+ X/ N, ?/ `& N) }8 q/ u
% 使用函数 ()进行参数估计) _8 C/ B' }# S
[k,fval,flag] = fmincon(@ObjFunc7Fmincon,k0,[],[],[],[],lb,ub,[],[],x0,yexp);- o8 G3 n+ J% v. k
fprintf('\n使用函数fmincon()估计得到的参数值为:\n')
) z) [& z5 x/ K1 A& T$ v: zfprintf('\tk1 = %.11f\n',k(1))0 O' M" p" M) O/ g9 v
fprintf('\tk2 = %.11f\n',k(2)) g$ g" q% n# L/ E
fprintf('\tk3 = %.11f\n',k(3))" Z b7 @' M [3 L, q# U0 S
fprintf('\tk4 = %.11f\n',k(4))6 m" B$ s) v! c* a
fprintf('\tk5 = %.11f\n',k(5))
' X7 {' A {8 A4 j* ~fprintf('\tk6 = %.11f\n',k(6))
* _3 V& A! D1 ~$ B3 A* o' B9 gfprintf('\tk7 = %.11f\n',k(7)); \7 r% Z8 T- a+ a2 r
fprintf('\tk8 = %.11f\n',k(8))5 B! L9 U! t3 a5 F; \- H6 `& S
fprintf('\tk9 = %.11f\n',k(9))
& V# T* t5 ~% o1 L$ Bfprintf('\tk10 = %.11f\n',k(10)) ?& K3 j+ e$ q9 B5 e
fprintf(' The sum of the squares is: %.1e\n\n',fval)
" z4 }' Q& i/ m9 B J, Gk_fm= k;' T7 c' J+ {$ i9 S) o. v+ F
% warning off
5 b& j$ H! { f0 f4 ]) y% 使用函数lsqnonlin()进行参数估计/ I9 v" d; T9 j, h
[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...
7 `. \& [1 r; G O5 P" ` lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp); ) I5 K. O. g _1 P
ci = nlparci(k,residual,jacobian);
. C* t, Q$ j' @; @ h# rfprintf('\n\n使用函数lsqnonlin()估计得到的参数值为:\n')
# ~( E% y# \$ I1 d: k( Xfprintf('\tk1 = %.11f\n',k(1))" z0 ^1 C8 ?/ a0 V! @, O# h- T
fprintf('\tk2 = %.11f\n',k(2))
2 a0 X$ [/ D* \fprintf('\tk3 = %.11f\n',k(3))
$ a% w' v4 o+ X) B9 a3 w2 Vfprintf('\tk4 = %.11f\n',k(4))
) t' W+ F& p9 b: L0 e( Ufprintf('\tk5 = %.11f\n',k(5)). L T9 D* B/ b* D l1 J
fprintf('\tk6 = %.11f\n',k(6))
% `3 f7 v/ I" dfprintf('\tk7 = %.11f\n',k(7))
; |' G4 ]9 r% }7 j+ [" H" d; Jfprintf('\tk8 = %.11f\n',k(8))
, u/ b- c) a8 ~6 `2 [+ R6 c5 lfprintf('\tk9 = %.11f\n',k(9))
$ l4 Q6 H/ p2 t! cfprintf('\tk10 = %.11f\n',k(10)) c c8 v# ^) l1 ~8 y* h
fprintf(' The sum of the squares is: %.1e\n\n',resnorm)8 k' y' ^! l7 ?8 g
k_ls = k;
7 t. v& _; F: M/ u7 ~1 m* poutput, J; d F1 M8 L
warning off
, V4 K6 E* c5 S/ U( O' w3 ]% q; r% 以函数fmincon()估计得到的结果为初值,使用函数lsqnonlin()进行参数估计% J" R% g* ?7 W% `1 D9 U- g$ ]. @& v: U
k0 = k_fm;
f2 f0 L; G- m[k,resnorm,residual,exitflag,output,lambda,jacobian] = ...7 l( M; A; d9 z! n2 W8 ~$ q* I
lsqnonlin(@ObjFunc7LNL,k0,lb,ub,[],x0,yexp);
$ Q! G0 ~- j8 t" W/ {8 [; G9 j9 Wci = nlparci(k,residual,jacobian);
) ]3 r( g* j* w0 B5 ~+ t1 jfprintf('\n\n以fmincon()的结果为初值,使用函数lsqnonlin()估计得到的参数值为:\n')1 r( H) N: ?4 B" f
fprintf('\tk1 = %.11f\n',k(1))4 c( k, O K( U9 D+ k1 D+ Q
fprintf('\tk2 = %.11f\n',k(2))
; ]- X* [. {1 Xfprintf('\tk3 = %.11f\n',k(3))3 c& U8 t! O" |+ Y+ U
fprintf('\tk4 = %.11f\n',k(4))
5 r$ G- N% H3 I/ H6 N, l# ]' Mfprintf('\tk5 = %.11f\n',k(5))
% ^3 E: ^- e+ C% V- ], Q3 D/ l7 Wfprintf('\tk6 = %.11f\n',k(6))
! b, {3 ^( s4 l7 @! d) B! Ofprintf('\tk7 = %.11f\n',k(7))
; S7 y: L0 X: E0 z4 Hfprintf('\tk8 = %.11f\n',k(8))5 r% [0 ^5 r! _9 ^8 \! O* | R" K
fprintf('\tk9 = %.11f\n',k(9))1 g# E" c9 X' X
fprintf('\tk10 = %.11f\n',k(10))
" @9 p- i7 `3 cfprintf(' The sum of the squares is: %.1e\n\n',resnorm)% D1 W( H+ { o: a2 d+ I3 d( a
k_fmls = k;) u+ O- y6 N. R! U: I
output. U) B6 w$ M% `4 [8 E
tspan = [0 15 30 45 60 90 120 180 240 300 360];
4 @0 @- s( H8 J- c: `% ]. Y[t x] = ode45(@KineticEqs,tspan,x0,[],k_fmls); 0 ^1 b8 h, e8 k' ~
figure;
8 r5 |, b9 A' W X. Y! o3 Nplot(t,x(:,1),t,yexp(:,2),'*');legend('Glc-pr','Glc-real')
% R( r6 q- k, _/ C8 ~figure;plot(t,x(:,2:5));
0 y6 W( i( ~3 ~, s/ q: K; dp=x(:,1:5)
* a) L# |0 s: Jhold on
) J6 V E& E8 K/ R( y# Xplot(t,yexp(:,3:6),'o');legend('Fru-pr','Fa-pr','La-pr','HMF-pr','Fru-real','Fa-real','La-real','HMF-real')
/ m) r. S! _3 T& p! Q4 p$ u, o3 J1 \' O: y( b1 k1 b" `+ n
2 d8 k1 b( T' S+ J V7 D- |: U, t" X- U+ L* p! r! M
function f = ObjFunc7LNL(k,x0,yexp)
1 I7 ^* C' A2 [ D% N' o( ftspan = [0 15 30 45 60 90 120 180 240 300 360];( y! D& {1 }, ]9 Q! I: J) Z# a* T
[t, x] = ode45(@KineticEqs,tspan,x0,[],k); 5 L, v& l5 y9 y3 ]5 N
y(:,2) = x(:,1);9 ]0 ~3 h# n6 s' y( W, }5 C
y(:,3:6) = x(:,2:5);
0 X: ~% o1 F G3 ^/ p: ^f1 = y(:,2) - yexp(:,2);# h+ V7 ?- T# W# [) u: p. x
f2 = y(:,3) - yexp(:,3);
; F: @4 m( f; S3 \% f6 K1 f* L, Af3 = y(:,4) - yexp(:,4);
# f3 t6 }( \2 l# p6 v1 @8 Hf4 = y(:,5) - yexp(:,5);' E, q6 j2 b" t& d ~) u
f5 = y(:,6) - yexp(:,6);
2 X3 b* t8 y9 B% g1 c9 x5 Jf = [f1; f2; f3; f4; f5];
8 \) Z" O5 X$ n+ W: t, \
$ T9 v$ g+ i2 K
! Q1 s5 \9 O" u N; i' F% G6 q! b1 |# i, ^5 [8 k
function f = ObjFunc7Fmincon(k,x0,yexp)+ b( [$ l( k y+ f$ t5 s- G
tspan = [0 15 30 45 60 90 120 180 240 300 360];
3 c3 g: _, T! n/ i+ Q& O' m# q[t x] = ode45(@KineticEqs,tspan,x0,[],k);
3 w. N8 Z _% r3 x' z0 n. _y(:,2) = x(:,1);
/ m7 c/ g: d! T/ my(:,3:6) = x(:,2:5);
6 o" z+ G4 L8 l. p5 p, C* Rf = sum((y(:,2)-yexp(:,2)).^2) + sum((y(:,3)-yexp(:,3)).^2) ...' ~$ r% c$ m/ }0 A r% E
+ sum((y(:,4)-yexp(:,4)).^2) + sum((y(:,5)-yexp(:,5)).^2) ...% l8 t/ e( c- k. \! Q" r
+ sum((y(:,6)-yexp(:,6)).^2) ;
- C, n; T z& `+ _8 S4 n( S, p& S) m" N6 z
/ B0 b6 o3 Q6 B- N E
# l, U4 |; K7 P7 J. ~2 I. e' u
" ?; }/ y. V K: Q5 |7 \5 H {5 W
function dxdt = KineticEqs(t,x,k): W/ s5 a5 ?" w
dGldt = k(1)*x(2)-(k(2)+k(3)+k(8))*x(1);
% Y, d7 `! h$ G3 N* |! Q; EdFrdt = k(2)*x(1)-(k(1)+k(4)+k(5)+k(9))*x(2);
. e' t! }% E, s3 ]# }" n* V; F6 z( C8 fdFadt = k(3)*x(1)+k(5)*x(2)+(k(6)+k(7))*x(5);8 a, R: P7 @, Q# a
dLadt = k(7)*x(5);
) f9 g& e1 q9 Y O: t0 odHmdt = k(4)*x(2)-(k(6)+k(7)+k(10))*x(5);& @# _/ d2 v' g# G/ ]* f
dxdt = [dGldt; dFrdt; dFadt; dLadt; dHmdt];
1 ?, b! a* v4 ] `. `
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